Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   R8906_RS05585 Genome accession   NZ_AP028346
Coordinates   1060815..1061774 (+) Length   319 a.a.
NCBI ID   WP_002876195.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10335     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1040487..1073991 1060815..1061774 within 0


Gene organization within MGE regions


Location: 1040487..1073991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8906_RS05475 (B10335_10730) pglI 1040487..1041416 (-) 930 WP_002867212.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -
  R8906_RS05480 (B10335_10740) pglH 1041409..1042488 (-) 1080 WP_079264556.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  R8906_RS05485 (B10335_10750) pglK 1042485..1044179 (-) 1695 WP_002869587.1 ABC-type lipopolysaccharide transporter PglK -
  R8906_RS05490 (B10335_10760) galE 1044173..1045159 (-) 987 WP_052778503.1 UDP-glucose 4-epimerase GalE -
  R8906_RS05495 (B10335_10770) - 1045218..1046012 (-) 795 WP_002860221.1 3'-5' exonuclease -
  R8906_RS05500 (B10335_10780) waaC 1046079..1047107 (+) 1029 WP_002876134.1 lipopolysaccharide heptosyltransferase I -
  R8906_RS05505 (B10335_10790) htrB 1047097..1047975 (+) 879 WP_002876133.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  R8906_RS05510 (B10335_10800) - 1047972..1048673 (+) 702 WP_002876132.1 glycosyltransferase family 2 protein -
  R8906_RS05515 (B10335_10810) rfbA 1048684..1049562 (+) 879 WP_002869595.1 glucose-1-phosphate thymidylyltransferase RfbA -
  R8906_RS05520 (B10335_10820) rfbB 1049562..1050593 (+) 1032 WP_002860226.1 dTDP-glucose 4,6-dehydratase -
  R8906_RS05525 (B10335_10830) wlaRA 1050596..1051033 (+) 438 WP_002891875.1 class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRA -
  R8906_RS05530 (B10335_10840) wlaRB 1051041..1051445 (+) 405 WP_002860228.1 class E lipooligosaccharide biosynthesis 3,4-ketoisomerase WlaRB -
  R8906_RS05535 (B10335_10850) - 1051435..1051878 (+) 444 WP_002860229.1 N-acetyltransferase -
  R8906_RS05540 (B10335_10860) - 1051900..1052427 (+) 528 WP_002876185.1 GNAT family N-acetyltransferase -
  R8906_RS08840 - 1052448..1052705 (+) 258 Protein_1070 hypothetical protein -
  R8906_RS05545 (B10335_10870) - 1052724..1053800 (+) 1077 WP_002876186.1 glycosyltransferase family 2 protein -
  R8906_RS05550 (B10335_10880) wlaRG 1053797..1054882 (+) 1086 WP_002876187.1 class E lipooligosaccharide biosynthesis aminotransferase WlaRG -
  R8906_RS05555 (B10335_10890) - 1054914..1056167 (-) 1254 WP_002876189.1 DUF2972 domain-containing protein -
  R8906_RS05560 (B10335_10900) - 1056164..1057186 (-) 1023 WP_002876190.1 hypothetical protein -
  R8906_RS05565 (B10335_10910) - 1057257..1058030 (+) 774 WP_002866160.1 glycosyltransferase family 25 protein -
  R8906_RS05570 (B10335_10920) wlaTB 1058023..1058979 (+) 957 WP_002860237.1 class E lipooligosaccharide biosynthesis protein WlaTB -
  R8906_RS05575 (B10335_10930) wlaTC 1058976..1059935 (+) 960 WP_002876191.1 class E lipooligosaccharide biosynthesis protein WlaTC -
  R8906_RS05580 (B10335_10940) - 1059938..1060756 (-) 819 WP_002876193.1 glycosyltransferase family 2 protein -
  R8906_RS05585 (B10335_10950) waaF 1060815..1061774 (+) 960 WP_002876195.1 lipopolysaccharide heptosyltransferase II Regulator
  R8906_RS05590 (B10335_10960) gmhA 1061755..1062315 (-) 561 WP_002876196.1 D-sedoheptulose 7-phosphate isomerase -
  R8906_RS05595 (B10335_10970) rfaE1 1062312..1063697 (-) 1386 WP_002910336.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  R8906_RS05600 (B10335_10980) rfaD 1063690..1064643 (-) 954 WP_002860242.1 ADP-glyceromanno-heptose 6-epimerase -
  R8906_RS05605 (B10335_10990) gmhB 1064644..1065205 (-) 562 Protein_1083 D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase -
  R8906_RS05610 (B10335_11000) - 1065286..1065588 (+) 303 WP_002852762.1 c-type cytochrome -
  R8906_RS05615 (B10335_11010) ccoS 1065611..1065817 (-) 207 WP_002852798.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  R8906_RS05620 (B10335_11020) - 1065814..1068171 (-) 2358 WP_079263609.1 heavy metal translocating P-type ATPase -
  R8906_RS05625 (B10335_11030) rho 1068280..1069578 (+) 1299 WP_002852852.1 transcription termination factor Rho -
  R8906_RS05630 (B10335_11040) dnaX 1069582..1071111 (+) 1530 WP_002869626.1 DNA polymerase III subunit gamma/tau -
  R8906_RS05635 - 1071108..1071626 (-) 519 Protein_1089 DUF2165 family protein -
  R8906_RS05640 (B10335_11070) copA 1071698..1073797 (-) 2100 WP_002869627.1 copper-translocating P-type ATPase CopA -
  R8906_RS05645 (B10335_11080) - 1073797..1073991 (-) 195 WP_052778499.1 heavy-metal-associated domain-containing protein -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36607.08 Da        Isoelectric Point: 10.2870

>NTDB_id=104544 R8906_RS05585 WP_002876195.1 1060815..1061774(+) (waaF) [Campylobacter jejuni strain BCH-10335]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDLSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHSKDLKLPFKLKLQDPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKSEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAILVHLDLACMPCMQKTCPLKHHKCMKDLKPQRVIEEARNLLKNSHR

Nucleotide


Download         Length: 960 bp        

>NTDB_id=104544 R8906_RS05585 WP_002876195.1 1060815..1061774(+) (waaF) [Campylobacter jejuni strain BCH-10335]
ATGAAAATTTTTATACATCTTCCCACTTGGCTGGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACAATCTCGCTATAAACAAGCCCTATCTTTACGCAAAGAACTTGGTAAGATCGATCTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTGCATATCCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTCTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAACTTCAAGACCCTCTTGTCTTAAAAAATGGTAAAAAAATTCTAGGACTCAATCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAATCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAACAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATGAAAACGCAATATTAGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATCTAAAGCCTCAAAGGGTTATAGAAGAGGCTAGAAATTTACTTAAAAACTCTCATCGATGA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(94-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

94.025

99.687

0.937

Multiple sequence alignment