Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | R8906_RS05225 | Genome accession | NZ_AP028346 |
| Coordinates | 990619..990921 (+) | Length | 100 a.a. |
| NCBI ID | WP_032582988.1 | Uniprot ID | A0A5Y9CSD3 |
| Organism | Campylobacter jejuni strain BCH-10335 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 985619..995921
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8906_RS05200 (B10335_10180) | rpsR | 985978..986238 (+) | 261 | WP_002853032.1 | 30S ribosomal protein S18 | - |
| R8906_RS05205 (B10335_10190) | lon | 986299..988674 (-) | 2376 | WP_032582985.1 | endopeptidase La | - |
| R8906_RS05210 (B10335_10200) | - | 988691..989338 (-) | 648 | WP_002860191.1 | outer membrane protein assembly factor BamD | - |
| R8906_RS05215 (B10335_10210) | fliW | 989499..989888 (+) | 390 | WP_002852982.1 | flagellar assembly protein FliW | - |
| R8906_RS05220 (B10335_10220) | proC | 989888..990622 (+) | 735 | WP_032582987.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| R8906_RS05225 (B10335_10230) | ctsT | 990619..990921 (+) | 303 | WP_032582988.1 | transformation system protein | Machinery gene |
| R8906_RS05230 (B10335_10240) | - | 990918..991580 (+) | 663 | WP_052778507.1 | hypothetical protein | - |
| R8906_RS05235 (B10335_10250) | - | 991577..992029 (+) | 453 | WP_002859148.1 | hypothetical protein | - |
| R8906_RS05240 (B10335_10260) | hemD | 992026..992655 (-) | 630 | WP_002859147.1 | uroporphyrinogen-III synthase | - |
| R8906_RS05245 (B10335_10270) | thiE | 992633..993265 (-) | 633 | WP_002852670.1 | thiamine phosphate synthase | - |
| R8906_RS05250 (B10335_10280) | thiD | 993255..994067 (-) | 813 | WP_002867189.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| R8906_RS05255 (B10335_10290) | - | 994064..994750 (-) | 687 | WP_002852847.1 | endonuclease III domain-containing protein | - |
| R8906_RS05260 (B10335_10300) | - | 994747..995508 (-) | 762 | WP_002852748.1 | ATP-binding protein | - |
Sequence
Protein
Download Length: 100 a.a. Molecular weight: 12150.21 Da Isoelectric Point: 6.2957
>NTDB_id=104542 R8906_RS05225 WP_032582988.1 990619..990921(+) (ctsT) [Campylobacter jejuni strain BCH-10335]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTTILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTTILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE
Nucleotide
Download Length: 303 bp
>NTDB_id=104542 R8906_RS05225 WP_032582988.1 990619..990921(+) (ctsT) [Campylobacter jejuni strain BCH-10335]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCACCATACTTCAAACTTCAGCCTTGAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCACCATACTTCAAACTTCAGCCTTGAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
98 |
100 |
0.98 |