Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | ACEPMY_RS15270 | Genome accession | NZ_CP168729 |
| Coordinates | 3218299..3219435 (+) | Length | 378 a.a. |
| NCBI ID | WP_197345552.1 | Uniprot ID | - |
| Organism | Ralstonia pseudosolanacearum strain RUN6340 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3213299..3224435
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ACEPMY_RS15245 (ACEPMY_15245) | - | 3213661..3213909 (-) | 249 | WP_011000353.1 | YfhL family 4Fe-4S dicluster ferredoxin | - |
| ACEPMY_RS15250 (ACEPMY_15250) | coaD | 3213960..3214466 (-) | 507 | WP_003262550.1 | pantetheine-phosphate adenylyltransferase | - |
| ACEPMY_RS15255 (ACEPMY_15255) | rsmD | 3214662..3215309 (-) | 648 | WP_011000352.1 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | - |
| ACEPMY_RS15260 (ACEPMY_15260) | - | 3215390..3216733 (-) | 1344 | WP_011000351.1 | pitrilysin family protein | - |
| ACEPMY_RS15265 (ACEPMY_15265) | - | 3216733..3218238 (-) | 1506 | WP_197345551.1 | pitrilysin family protein | - |
| ACEPMY_RS15270 (ACEPMY_15270) | pilA | 3218299..3219435 (+) | 1137 | WP_197345552.1 | signal recognition particle-docking protein FtsY | Machinery gene |
| ACEPMY_RS15275 (ACEPMY_15275) | - | 3219432..3220070 (-) | 639 | WP_011000348.1 | LysE/ArgO family amino acid transporter | - |
| ACEPMY_RS15280 (ACEPMY_15280) | maiA | 3220067..3220717 (-) | 651 | WP_197342870.1 | maleylacetoacetate isomerase | - |
| ACEPMY_RS15285 (ACEPMY_15285) | - | 3220721..3221422 (-) | 702 | WP_011000346.1 | fumarylacetoacetate hydrolase family protein | - |
| ACEPMY_RS15290 (ACEPMY_15290) | - | 3221570..3222196 (+) | 627 | WP_038938076.1 | ANTAR domain-containing response regulator | - |
| ACEPMY_RS15295 (ACEPMY_15295) | - | 3222473..3223735 (+) | 1263 | WP_019717482.1 | CmpA/NrtA family ABC transporter substrate-binding protein | - |
Sequence
Protein
Download Length: 378 a.a. Molecular weight: 40069.30 Da Isoelectric Point: 6.1623
>NTDB_id=1045352 ACEPMY_RS15270 WP_197345552.1 3218299..3219435(+) (pilA) [Ralstonia pseudosolanacearum strain RUN6340]
MFSFWKKRKAEPQPAAEPAPPAAPEAAQAPAPAPAPVAAPVPTPAPAPVAVPDTPAAPAALDMQADDIETVPTPPVVEQA
RKGWMSRLRSGLSKTSKSLTTLFVGVKVNEALFEELETALLMADAGVDATEYLLDELRRRVKAQRIETAEGVKTALRDLL
IELLHPLEKTMVLGRDQPTVIMIAGVNGAGKTTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQE
SGDPAAVIFDAVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQNALAQVKAFDD
ALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALLG
MFSFWKKRKAEPQPAAEPAPPAAPEAAQAPAPAPAPVAAPVPTPAPAPVAVPDTPAAPAALDMQADDIETVPTPPVVEQA
RKGWMSRLRSGLSKTSKSLTTLFVGVKVNEALFEELETALLMADAGVDATEYLLDELRRRVKAQRIETAEGVKTALRDLL
IELLHPLEKTMVLGRDQPTVIMIAGVNGAGKTTSIGKLCKHFQTYGQSVLLAAGDTFRAAAREQLVIWGQRNNVTVVAQE
SGDPAAVIFDAVNAARARGIDIVMADTAGRLPTQLHLMEELKKVRRVIGKAMATAPHETLLVIDANTGQNALAQVKAFDD
ALGLTGLIVTKLDGTAKGGILAAIARQRPVPVYFIGVGEQVEDLQPFSAREFADALLG
Nucleotide
Download Length: 1137 bp
>NTDB_id=1045352 ACEPMY_RS15270 WP_197345552.1 3218299..3219435(+) (pilA) [Ralstonia pseudosolanacearum strain RUN6340]
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCAGAGCCCCAGCCGGCTGCCGAACCGGCGCCGCCCGCCGCGCCCGAAGCCGC
ACAGGCTCCTGCTCCTGCCCCGGCCCCGGTTGCCGCCCCCGTCCCCACGCCGGCTCCCGCCCCGGTCGCCGTGCCGGATA
CGCCGGCCGCGCCGGCTGCGCTGGACATGCAGGCCGATGACATCGAGACCGTGCCGACGCCGCCCGTGGTGGAGCAGGCG
CGCAAAGGCTGGATGTCGCGCCTGCGCTCGGGCCTGTCGAAGACCAGCAAGAGCCTGACCACGCTGTTCGTCGGCGTGAA
GGTGAACGAGGCGCTGTTCGAGGAGCTGGAGACCGCGCTGCTGATGGCCGATGCCGGCGTCGATGCCACCGAGTACCTGC
TGGACGAACTGCGCCGCCGCGTGAAGGCCCAGCGCATCGAGACCGCCGAGGGCGTGAAGACCGCGCTGCGCGACCTGCTC
ATCGAGCTGCTGCATCCGCTCGAAAAGACCATGGTGCTCGGCCGCGACCAGCCGACGGTGATCATGATCGCGGGCGTCAA
CGGTGCCGGCAAGACCACCAGCATCGGCAAGCTGTGCAAGCACTTCCAGACCTATGGACAGTCCGTGCTGCTGGCCGCCG
GCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTGGTGATCTGGGGCCAGCGCAACAACGTGACCGTGGTGGCGCAGGAA
TCGGGCGACCCGGCCGCCGTGATCTTCGACGCGGTGAACGCGGCGCGCGCCCGCGGCATCGACATCGTCATGGCCGACAC
CGCCGGCCGCCTGCCGACCCAGCTGCACCTGATGGAAGAGCTGAAGAAGGTGCGCCGCGTGATCGGCAAAGCGATGGCGA
CCGCGCCGCACGAGACCCTGCTGGTGATCGACGCCAACACCGGCCAGAACGCGCTGGCGCAGGTGAAAGCCTTCGACGAT
GCGCTCGGCCTGACCGGCCTGATCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCCTGGCCGCCATCGCGCGGCA
GCGGCCGGTGCCGGTATATTTCATCGGCGTGGGCGAGCAGGTGGAAGACCTGCAGCCGTTCTCCGCGCGCGAATTCGCCG
ACGCGCTGCTGGGCTAA
ATGTTTAGTTTCTGGAAGAAGCGCAAGGCAGAGCCCCAGCCGGCTGCCGAACCGGCGCCGCCCGCCGCGCCCGAAGCCGC
ACAGGCTCCTGCTCCTGCCCCGGCCCCGGTTGCCGCCCCCGTCCCCACGCCGGCTCCCGCCCCGGTCGCCGTGCCGGATA
CGCCGGCCGCGCCGGCTGCGCTGGACATGCAGGCCGATGACATCGAGACCGTGCCGACGCCGCCCGTGGTGGAGCAGGCG
CGCAAAGGCTGGATGTCGCGCCTGCGCTCGGGCCTGTCGAAGACCAGCAAGAGCCTGACCACGCTGTTCGTCGGCGTGAA
GGTGAACGAGGCGCTGTTCGAGGAGCTGGAGACCGCGCTGCTGATGGCCGATGCCGGCGTCGATGCCACCGAGTACCTGC
TGGACGAACTGCGCCGCCGCGTGAAGGCCCAGCGCATCGAGACCGCCGAGGGCGTGAAGACCGCGCTGCGCGACCTGCTC
ATCGAGCTGCTGCATCCGCTCGAAAAGACCATGGTGCTCGGCCGCGACCAGCCGACGGTGATCATGATCGCGGGCGTCAA
CGGTGCCGGCAAGACCACCAGCATCGGCAAGCTGTGCAAGCACTTCCAGACCTATGGACAGTCCGTGCTGCTGGCCGCCG
GCGACACCTTCCGCGCCGCCGCGCGCGAGCAGCTGGTGATCTGGGGCCAGCGCAACAACGTGACCGTGGTGGCGCAGGAA
TCGGGCGACCCGGCCGCCGTGATCTTCGACGCGGTGAACGCGGCGCGCGCCCGCGGCATCGACATCGTCATGGCCGACAC
CGCCGGCCGCCTGCCGACCCAGCTGCACCTGATGGAAGAGCTGAAGAAGGTGCGCCGCGTGATCGGCAAAGCGATGGCGA
CCGCGCCGCACGAGACCCTGCTGGTGATCGACGCCAACACCGGCCAGAACGCGCTGGCGCAGGTGAAAGCCTTCGACGAT
GCGCTCGGCCTGACCGGCCTGATCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGCATCCTGGCCGCCATCGCGCGGCA
GCGGCCGGTGCCGGTATATTTCATCGGCGTGGGCGAGCAGGTGGAAGACCTGCAGCCGTTCTCCGCGCGCGAATTCGCCG
ACGCGCTGCTGGGCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Neisseria gonorrhoeae MS11 |
52.163 |
100 |
0.574 |