Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QPK16_RS21525 Genome accession   NZ_OX638610
Coordinates   4714029..4714538 (+) Length   169 a.a.
NCBI ID   WP_023121650.1    Uniprot ID   A0A3P4B2X0
Organism   Pseudomonas aeruginosa strain 3541 isolate 3541     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4709029..4719538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QPK16_RS21495 (JCHGIK_22770) chrA 4709394..4710596 (-) 1203 WP_023121656.1 chromate efflux transporter -
  QPK16_RS21500 (JCHGIK_22775) arsH 4710596..4711318 (-) 723 WP_031655584.1 arsenical resistance protein ArsH -
  QPK16_RS21505 (JCHGIK_22780) arsC 4711311..4711733 (-) 423 WP_023121654.1 arsenate reductase (glutaredoxin) -
  QPK16_RS21510 (JCHGIK_22785) arsB 4711743..4712819 (-) 1077 WP_023121653.1 ACR3 family arsenite efflux transporter -
  QPK16_RS21515 (JCHGIK_22790) - 4712827..4713321 (-) 495 WP_023121652.1 arsenate reductase ArsC -
  QPK16_RS21520 (JCHGIK_22795) - 4713326..4713649 (-) 324 WP_023121651.1 helix-turn-helix domain-containing protein -
  QPK16_RS21525 (JCHGIK_22800) radC 4714029..4714538 (+) 510 WP_023121650.1 DNA repair protein RadC Machinery gene
  QPK16_RS21530 (JCHGIK_22805) - 4714815..4715165 (+) 351 WP_023121649.1 DUF2958 domain-containing protein -
  QPK16_RS21535 (JCHGIK_22810) - 4715231..4715509 (+) 279 WP_023121648.1 hypothetical protein -
  QPK16_RS21540 (JCHGIK_22815) - 4716225..4717055 (+) 831 WP_023121647.1 DUF932 domain-containing protein -
  QPK16_RS21545 (JCHGIK_22820) - 4717136..4719220 (+) 2085 WP_023121646.1 ParB/RepB/Spo0J family partition protein -
  QPK16_RS21550 (JCHGIK_22825) - 4719283..4719492 (+) 210 WP_023121645.1 hypothetical protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18596.22 Da        Isoelectric Point: 6.3362

>NTDB_id=1045341 QPK16_RS21525 WP_023121650.1 4714029..4714538(+) (radC) [Pseudomonas aeruginosa strain 3541 isolate 3541]
MSQLSFSSFDSSLMVRDAQGRYLLATAEQILEAARQAIERKMQRGTSFTSPAAVKEYLRAKLAGFEHEVFAVLFMDTQHR
LIEYAEMFRGTIDGASVYPRELVKEALRLNAAAVIISHNHPSGNPEPSGADRALTQRLKEALGLVDVRVLDHVIVAGTDT
TSFAECGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=1045341 QPK16_RS21525 WP_023121650.1 4714029..4714538(+) (radC) [Pseudomonas aeruginosa strain 3541 isolate 3541]
ATGTCGCAACTGTCCTTTTCCTCGTTCGATTCCTCGCTGATGGTGCGTGACGCACAGGGCCGCTACCTGCTGGCGACTGC
CGAGCAGATTCTGGAGGCCGCGCGCCAGGCCATCGAGCGCAAGATGCAACGCGGTACGTCGTTCACGTCGCCGGCGGCGG
TCAAGGAGTACCTGCGCGCCAAGCTGGCCGGCTTCGAGCATGAGGTGTTCGCGGTGCTGTTCATGGACACGCAACATCGG
CTGATCGAATACGCCGAAATGTTCCGCGGCACCATCGACGGCGCATCGGTGTATCCGCGCGAGCTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCGGCGGTCATCATTTCGCACAACCATCCGAGCGGCAATCCCGAGCCGAGCGGTGCCGACCGGGCGC
TGACCCAGCGGCTCAAGGAGGCGCTGGGGCTGGTGGACGTGCGCGTGCTGGATCACGTCATCGTGGCGGGCACCGACACC
ACATCGTTTGCCGAATGCGGCTTGATCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P4B2X0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45.775

84.024

0.385

Multiple sequence alignment