Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   R8917_RS08710 Genome accession   NZ_AP028344
Coordinates   1681305..1682336 (-) Length   343 a.a.
NCBI ID   WP_052804634.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10331     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1676305..1687336
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8917_RS08655 (B10331_16950) - 1676470..1676907 (-) 438 WP_002856466.1 DUF411 domain-containing protein -
  R8917_RS08660 (B10331_16960) - 1677193..1677636 (-) 444 WP_218982761.1 hypothetical protein -
  R8917_RS08690 (B10331_16970) - 1678292..1679140 (-) 849 WP_052804635.1 DNA ligase -
  R8917_RS08695 (B10331_16980) cgpA 1679140..1679802 (-) 663 WP_002866836.1 glycoprotein CgpA -
  R8917_RS08700 (B10331_16990) - 1679792..1679995 (-) 204 WP_002839177.1 hypothetical protein -
  R8917_RS08705 (B10331_17000) eno 1680061..1681305 (-) 1245 WP_002856489.1 phosphopyruvate hydratase -
  R8917_RS08710 (B10331_17010) recA 1681305..1682336 (-) 1032 WP_052804634.1 recombinase RecA Machinery gene
  R8917_RS08715 (B10331_17020) - 1682442..1683302 (+) 861 WP_002856256.1 menaquinone biosynthesis family protein -
  R8917_RS08720 (B10331_17030) fliQ 1683314..1683583 (+) 270 WP_002851290.1 flagellar biosynthesis protein FliQ -
  R8917_RS08725 (B10331_17040) murB 1683580..1684356 (+) 777 WP_032590260.1 UDP-N-acetylmuramate dehydrogenase -
  R8917_RS08730 (B10331_17050) - 1684380..1685150 (-) 771 WP_072225822.1 hypothetical protein -
  R8917_RS08735 (B10331_17060) cysQ 1685190..1685954 (-) 765 WP_002856487.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  R8917_RS08740 (B10331_17070) gltA 1686035..1687303 (-) 1269 WP_052804632.1 citrate synthase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37063.30 Da        Isoelectric Point: 4.9784

>NTDB_id=104531 R8917_RS08710 WP_052804634.1 1681305..1682336(-) (recA) [Campylobacter jejuni strain BCH-10331]
MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSVGLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIA
ECQKAGGVCAFIDAEHALDVKYAKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFYASVRLDVRKVATLKQNEEPIGN
RIKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELIDYGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEIT
KAIQNSMGIEGMISGSEDDEGEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=104531 R8917_RS08710 WP_052804634.1 1681305..1682336(-) (recA) [Campylobacter jejuni strain BCH-10331]
ATGGATGATAATAAAAGAAAATCTCTAGACGCTGCCCTAAAAAGTTTAGATAAAACCTTTGGAAAAGGCACTATCTTAAG
ACTAGGGGATAAAGAAGTCGAGCAAATCGATAGCATAGGCACAGGTTCAGTTGGACTTGATCTTGCTTTAGGTATAGGCG
GTGTTCCAAAAGGAAGAATTATAGAAATTTATGGGCCTGAAAGTTCAGGTAAAACCACTCTAACTCTACACATTATCGCA
GAATGCCAAAAAGCAGGTGGAGTTTGTGCTTTTATCGATGCAGAACACGCTCTTGATGTAAAATATGCTAAAAATTTGGG
TGTAAATACAGATGATTTGTATGTTTCTCAACCTGATTTTGGAGAGCAAGCCTTAGAAATTGTAGAAACTATAGCAAGAA
GTGGTGCAGTAGATCTTATCGTAGTAGATAGCGTTGCAGCACTTACCCCAAAAGCAGAAATTGAAGGCGATATGGGCGAT
CAACATGTAGGACTTCAAGCAAGACTTATGTCTCAAGCTCTAAGAAAACTTACAGGTATAGTTCATAAAATGAATACCAC
GGTAATTTTCATCAACCAAATTCGTATGAAAATCGGTGCTATGGGTTATGGTACTCCTGAAACCACAACAGGTGGAAATG
CATTAAAATTTTATGCTTCTGTGCGTTTAGATGTTAGAAAAGTAGCAACCTTAAAACAAAACGAAGAACCTATAGGAAAC
CGCATTAAAGTAAAAGTAGTTAAAAATAAAGTTGCTCCTCCATTCAGACAAGCTGAATTTGATGTGATGTTTGGAGAGGG
TTTAAGTCGTGAAGGTGAATTGATCGATTATGGTGTAAAACTTGATATCGTAGATAAAAGCGGTGCGTGGTTTTCTTATA
AAGATAAAAAACTTGGACAAGGTAGAGAAAACTCAAAAGCTTTCTTAAAAGAAAACCCTGAAATTGCAGATGAAATCACA
AAAGCAATTCAAAATTCTATGGGAATAGAAGGTATGATCAGCGGTAGCGAAGATGACGAAGGAGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

99.708

100

0.997
  recA Helicobacter pylori 26695

79.268

95.627

0.758
  recA Helicobacter pylori strain NCTC11637

78.963

95.627

0.755
  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647
  recA Neisseria gonorrhoeae MS11

65.103

99.417

0.647
  recA Neisseria gonorrhoeae strain FA1090

65.103

99.417

0.647
  recA Acinetobacter baylyi ADP1

62.974

100

0.63
  recA Acinetobacter baumannii D1279779

61.808

100

0.618
  recA Glaesserella parasuis strain SC1401

65.031

95.044

0.618
  recA Pseudomonas stutzeri DSM 10701

64.832

95.335

0.618
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.855

96.793

0.618
  recA Ralstonia pseudosolanacearum GMI1000

63.72

95.627

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.506

94.461

0.609
  recA Vibrio cholerae strain A1552

64.506

94.461

0.609
  recA Bacillus subtilis subsp. subtilis str. 168

63.914

95.335

0.609
  recA Streptococcus pneumoniae Rx1

58.824

99.125

0.583
  recA Streptococcus pneumoniae D39

58.824

99.125

0.583
  recA Streptococcus pneumoniae R6

58.824

99.125

0.583
  recA Streptococcus pneumoniae TIGR4

58.824

99.125

0.583
  recA Streptococcus mitis SK321

57.647

99.125

0.571
  recA Streptococcus mitis NCTC 12261

58.967

95.918

0.566
  recA Streptococcus pyogenes NZ131

58.788

96.21

0.566
  recA Latilactobacillus sakei subsp. sakei 23K

59.021

95.335

0.563
  recA Streptococcus mutans UA159

57.704

96.501

0.557
  recA Lactococcus lactis subsp. cremoris KW2

57.447

95.918

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.861

92.128

0.542

Multiple sequence alignment