Detailed information    

insolico Bioinformatically predicted

Overview


Name   proC   Type   Machinery gene
Locus tag   ACEN40_RS04705 Genome accession   NZ_CP168724
Coordinates   911599..912330 (-) Length   243 a.a.
NCBI ID   WP_158334595.1    Uniprot ID   -
Organism   Campylobacter bilis strain 64     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 906599..917330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN40_RS04670 (ACEN40_04670) - 907476..908162 (+) 687 WP_203121189.1 3-methyladenine DNA glycosylase -
  ACEN40_RS04675 (ACEN40_04675) thiD 908159..908968 (+) 810 WP_158334542.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ACEN40_RS04680 (ACEN40_04680) thiE 908958..909590 (+) 633 WP_158334543.1 thiamine phosphate synthase -
  ACEN40_RS04685 (ACEN40_04685) - 909568..910197 (+) 630 WP_158334594.1 uroporphyrinogen-III synthase -
  ACEN40_RS04690 (ACEN40_04690) - 910194..910645 (-) 452 Protein_906 hypothetical protein -
  ACEN40_RS04695 (ACEN40_04695) - 910642..911304 (-) 663 WP_158334545.1 hypothetical protein -
  ACEN40_RS04700 (ACEN40_04700) ctsT 911301..911618 (-) 318 WP_193699218.1 hypothetical protein Machinery gene
  ACEN40_RS04705 (ACEN40_04705) proC 911599..912330 (-) 732 WP_158334595.1 pyrroline-5-carboxylate reductase Machinery gene
  ACEN40_RS04710 (ACEN40_04710) fliW 912330..912719 (-) 390 WP_158334546.1 flagellar assembly protein FliW -
  ACEN40_RS04715 (ACEN40_04715) bamD 912886..913533 (+) 648 WP_158334547.1 outer membrane protein assembly factor BamD -
  ACEN40_RS04720 (ACEN40_04720) lon 913551..915929 (+) 2379 WP_158334548.1 endopeptidase La -
  ACEN40_RS04725 (ACEN40_04725) rpsR 915980..916240 (-) 261 WP_158334549.1 30S ribosomal protein S18 -
  ACEN40_RS04730 (ACEN40_04730) - 916253..916801 (-) 549 WP_158334550.1 single-stranded DNA-binding protein -
  ACEN40_RS04735 (ACEN40_04735) rpsF 916810..917187 (-) 378 WP_158334551.1 30S ribosomal protein S6 -

Sequence


Protein


Download         Length: 243 a.a.        Molecular weight: 26595.02 Da        Isoelectric Point: 8.7310

>NTDB_id=1045290 ACEN40_RS04705 WP_158334595.1 911599..912330(-) (proC) [Campylobacter bilis strain 64]
MLYILANGTMAKALAYGLKNHYQICIVGRNLEKLQSFAKEGFKILLYEDFDINNKDLILAFKPYALENVAKLLKGQARIL
ISVLANTDFNKLQIIPAQNYARIMPNTAAKYQASTTPYILKNFLFEDEILKILTTFGSAYKLDNEDQMGAAMAISGCAPA
FLALVAESIANAGVCEGLSKELSLNLTRSLFKSSSALLEQEHPAIIKENICSPGGVTIKGIKVLEQKGIRGSFFEAISAS
NTK

Nucleotide


Download         Length: 732 bp        

>NTDB_id=1045290 ACEN40_RS04705 WP_158334595.1 911599..912330(-) (proC) [Campylobacter bilis strain 64]
ATGCTTTATATACTTGCAAATGGAACTATGGCAAAAGCCTTAGCCTATGGATTAAAAAATCATTATCAAATCTGCATAGT
AGGAAGAAATTTAGAAAAACTTCAAAGTTTTGCTAAAGAAGGTTTTAAAATCTTACTTTATGAAGATTTTGATATAAATA
ATAAAGATCTTATCTTAGCTTTTAAACCCTATGCTTTAGAAAATGTTGCTAAACTCTTAAAAGGGCAAGCACGCATTTTA
ATCTCTGTTTTAGCCAATACTGACTTTAATAAATTGCAAATTATCCCTGCTCAAAATTATGCTAGAATCATGCCTAATAC
AGCAGCTAAATATCAAGCCTCTACCACGCCTTATATACTCAAAAATTTCCTCTTTGAAGATGAAATCTTAAAAATTTTAA
CCACTTTTGGTTCAGCTTATAAATTAGACAATGAAGATCAAATGGGTGCTGCTATGGCAATCAGCGGCTGTGCTCCTGCT
TTTTTAGCTCTTGTGGCAGAAAGCATTGCCAATGCTGGTGTATGTGAAGGCTTATCAAAAGAACTTAGTCTTAATCTGAC
CCGATCTTTGTTTAAAAGCTCAAGTGCTTTATTAGAACAAGAACATCCTGCTATCATCAAAGAAAACATTTGTTCACCAG
GGGGCGTTACTATAAAAGGCATTAAAGTGCTTGAACAAAAAGGAATTCGTGGCAGCTTTTTCGAAGCCATAAGTGCTAGC
AATACTAAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

83.951

100

0.84


Multiple sequence alignment