Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   ACEN41_RS04965 Genome accession   NZ_CP168723
Coordinates   923912..924871 (+) Length   319 a.a.
NCBI ID   WP_158334092.1    Uniprot ID   -
Organism   Campylobacter bilis strain 63     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 918912..929871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN41_RS04945 (ACEN41_04945) - 920111..921161 (+) 1051 Protein_955 beta-1,4-N-acetylgalactosaminyltransferase -
  ACEN41_RS04950 (ACEN41_04950) - 921132..922075 (-) 944 Protein_956 glycosyltransferase family 2 protein -
  ACEN41_RS04955 (ACEN41_04955) - 922212..923045 (-) 834 WP_158334094.1 glycosyltransferase -
  ACEN41_RS04960 (ACEN41_04960) - 923029..923853 (-) 825 WP_158334093.1 glycosyltransferase family 2 protein -
  ACEN41_RS04965 (ACEN41_04965) waaF 923912..924871 (+) 960 WP_158334092.1 glycosyltransferase family 9 protein Regulator
  ACEN41_RS04970 (ACEN41_04970) - 924990..925886 (+) 897 WP_158334091.1 alpha-2,3-sialyltransferase -
  ACEN41_RS04975 (ACEN41_04975) - 925874..926914 (+) 1041 WP_158334090.1 N-acetylneuraminate synthase family protein -
  ACEN41_RS04980 (ACEN41_04980) neuC 926911..928029 (+) 1119 WP_203121127.1 UDP-N-acetylglucosamine 2-epimerase -
  ACEN41_RS04985 (ACEN41_04985) - 928112..928792 (+) 681 WP_158334089.1 cytidylyltransferase domain-containing protein -
  ACEN41_RS04990 (ACEN41_04990) gmhA 928879..929439 (-) 561 WP_158334088.1 D-sedoheptulose 7-phosphate isomerase -

Sequence

Protein


Download         Length: 319 a.a.        Molecular weight: 36595.32 Da        Isoelectric Point: 10.3616

>NTDB_id=1045270 ACEN41_RS04965 WP_158334092.1 923912..924871(+) (waaF) [Campylobacter bilis strain 63]
MKIFIHLPTWLGDAVMASAALYGVYERFKNAHFILYGSLASTALFKEFPNAQIIIEEKKTRYKQALSLRKTLGKIDLGIS
FRSALSSKIILHMLKIKQRYFFNKYRFKEEHQVLKYLYFIENSLHYKINSQALKLPFKLKFQSPLVLKNGKKILGLNPGA
SFGSAKRWDANYFAEVALNFSKTHEVLIFGAGKTEQELCDEIFNILKEKNIKVKNLCNKTTIKTLCQNIAFCDIFITNDS
GPMHISTVYKVKTVAIFGPTKFTQTSPWQNKNAQLAHLNLDCMPCMQKICPLKHHKCMKDLNPKIVIKKAQNIISNSMI

Nucleotide


Download         Length: 960 bp        

>NTDB_id=1045270 ACEN41_RS04965 WP_158334092.1 923912..924871(+) (waaF) [Campylobacter bilis strain 63]
ATGAAAATTTTTATCCATCTTCCCACTTGGTTAGGCGATGCTGTTATGGCTTCAGCAGCTTTATATGGAGTTTATGAACG
TTTTAAAAACGCGCATTTTATACTGTATGGATCTTTAGCATCAACAGCACTTTTTAAAGAATTTCCCAATGCACAAATCA
TTATAGAAGAAAAAAAAACGCGTTATAAACAAGCTTTAAGCTTACGCAAAACATTAGGTAAAATCGACCTTGGCATTTCT
TTTAGATCAGCTTTATCTTCTAAGATCATTTTACACATGCTTAAAATCAAGCAAAGATATTTTTTTAATAAATATAGATT
TAAAGAAGAACACCAAGTTTTAAAATATCTTTATTTCATAGAAAATTCCCTTCATTATAAAATAAACTCTCAAGCATTAA
AACTTCCTTTTAAATTAAAATTTCAAAGCCCTTTAGTATTAAAAAACGGCAAAAAAATCCTAGGTCTAAACCCAGGAGCT
AGTTTTGGAAGTGCTAAAAGATGGGATGCAAATTATTTTGCTGAGGTGGCTTTAAATTTTTCCAAAACCCATGAAGTTTT
AATCTTTGGAGCAGGTAAAACCGAACAAGAACTTTGCGATGAAATTTTTAATATCCTAAAAGAAAAAAACATCAAAGTTA
AAAATCTTTGCAATAAAACTACTATCAAAACACTTTGTCAAAACATTGCTTTTTGTGATATTTTTATCACAAATGATAGT
GGCCCTATGCATATTAGCACTGTTTACAAGGTCAAAACTGTGGCTATTTTTGGCCCGACAAAATTCACCCAAACCTCGCC
ATGGCAAAACAAAAATGCACAATTAGCCCATTTAAATCTCGATTGCATGCCCTGTATGCAAAAAATTTGCCCTTTAAAAC
ACCATAAATGCATGAAAGATTTAAATCCCAAAATAGTTATAAAAAAAGCACAAAACATCATCAGTAATTCTATGATTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(107-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

78.997

100

0.79

Multiple sequence alignment