Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   R8917_RS07400 Genome accession   NZ_AP028344
Coordinates   1436324..1437508 (-) Length   394 a.a.
NCBI ID   WP_002869135.1    Uniprot ID   A0A5Y6R1F0
Organism   Campylobacter jejuni strain BCH-10331     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1431324..1442508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8917_RS07375 (B10331_14450) fliL 1432472..1433008 (+) 537 WP_002855429.1 flagellar basal body-associated protein FliL -
  R8917_RS07380 (B10331_14460) acpS 1433008..1433355 (+) 348 WP_002825806.1 holo-ACP synthase -
  R8917_RS07385 (B10331_14470) - 1433356..1433775 (-) 420 WP_002855518.1 hypothetical protein -
  R8917_RS07390 (B10331_14480) - 1433772..1435133 (-) 1362 WP_002855307.1 cytochrome P450 -
  R8917_RS07395 (B10331_14490) - 1435130..1436251 (-) 1122 WP_218982769.1 DUF829 domain-containing protein -
  R8917_RS07400 (B10331_14500) kpsS 1436324..1437508 (-) 1185 WP_002869135.1 capsule polysaccharide modification protein KpsS Regulator
  R8917_RS07405 (B10331_14510) kpsC 1437505..1439574 (-) 2070 WP_249605647.1 capsular polysaccharide biosynthesis protein -
  R8917_RS07410 (B10331_14520) - 1439651..1440904 (-) 1254 WP_249605646.1 cation:proton antiporter -
  R8917_RS07415 (B10331_14530) - 1440914..1441873 (-) 960 WP_249621307.1 pyruvate kinase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46880.55 Da        Isoelectric Point: 9.8673

>NTDB_id=104524 R8917_RS07400 WP_002869135.1 1436324..1437508(-) (kpsS) [Campylobacter jejuni strain BCH-10331]
MRFNTKIKKEFSGKNVLLLQGPVGNFFHHLAIRMEKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHAKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=104524 R8917_RS07400 WP_002869135.1 1436324..1437508(-) (kpsS) [Campylobacter jejuni strain BCH-10331]
ATGAGATTTAATACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATAAGAATGGAAAAAAAACAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGTATTATCCATGCTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGGGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAATCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGTTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AGGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTAGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A5Y6R1F0

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.716

100

0.977


Multiple sequence alignment