Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACEPSS_RS04885 Genome accession   NZ_CP168716
Coordinates   973916..975298 (+) Length   460 a.a.
NCBI ID   WP_395317909.1    Uniprot ID   -
Organism   Fructilactobacillus frigidiflavus strain FUA3702     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 968916..980298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSS_RS04865 - 970004..970744 (+) 741 WP_395317901.1 hypothetical protein -
  ACEPSS_RS04870 - 971143..972477 (-) 1335 WP_395317903.1 C1 family peptidase -
  ACEPSS_RS04875 rpiA 972534..973220 (-) 687 WP_395317905.1 ribose-5-phosphate isomerase RpiA -
  ACEPSS_RS04880 - 973368..973904 (+) 537 WP_395317907.1 dUTP diphosphatase -
  ACEPSS_RS04885 radA 973916..975298 (+) 1383 WP_395317909.1 DNA repair protein RadA Machinery gene
  ACEPSS_RS04890 gltX 975373..976863 (+) 1491 WP_395317911.1 glutamate--tRNA ligase -
  ACEPSS_RS04895 cysS 976977..978386 (+) 1410 WP_395320496.1 cysteine--tRNA ligase -
  ACEPSS_RS04900 - 978392..978817 (+) 426 WP_395317913.1 Mini-ribonuclease 3 -
  ACEPSS_RS04905 rlmB 978807..979559 (+) 753 WP_395317915.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ACEPSS_RS04910 - 979562..980101 (+) 540 WP_395317917.1 NYN domain-containing protein -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49868.17 Da        Isoelectric Point: 6.3226

>NTDB_id=1045202 ACEPSS_RS04885 WP_395317909.1 973916..975298(+) (radA) [Fructilactobacillus frigidiflavus strain FUA3702]
MAKASTRFVCSNCGYVSPTYLGRCPNCGEWNTFEEETVTKNDTKTANVTRVSFEGKKSKPTLIDDVDAHDAPRYQIESNE
LNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSGQLSQSGKRVLYVTGEESADQVKMRADRLGVKHFDNLYVFPETDMTA
IREAIANVKPDVVIIDSVQTMQEGDVASAIGSVSQVRGVTADLMNIAKTNNITIFIVGHVTKGGAIAGPKTLEHMVDTVL
YFEGDKHHSYRLLRAVKNRFGSTNELGIFEMVDSGLKEVANPSEIFLEERLHNATGSAIVVAMEGTRPILVELQALITPS
VFGNAQRTATGVDRNRVSLIMAVLEKRAGLMLQNQDAYLKAAGGVKLVEPAIDLAMAISIASSYEDISTDPKECYIGELG
LTGEIRRVDRIEQRIREAAKLGFARVIVPKHNLDGLKLDAEIEVVGVTTIREALKIALKK

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1045202 ACEPSS_RS04885 WP_395317909.1 973916..975298(+) (radA) [Fructilactobacillus frigidiflavus strain FUA3702]
ATGGCAAAAGCATCGACACGCTTTGTGTGTTCTAACTGTGGGTATGTTTCACCCACGTATCTAGGCCGTTGTCCCAACTG
TGGGGAATGGAACACTTTTGAAGAAGAAACGGTCACCAAAAATGATACCAAGACGGCCAACGTTACTCGAGTTTCTTTTG
AAGGAAAGAAATCCAAGCCCACTTTAATTGATGATGTTGATGCTCATGATGCACCACGTTATCAAATTGAGTCTAACGAA
TTGAACCGCGTTTTAGGTGGTGGCGTGGTTCCTGGTTCCTTAGTTTTAATCGGTGGGGATCCCGGAATTGGAAAGTCAAC
TTTACTATTACAAGTTTCAGGGCAGTTAAGCCAGTCTGGTAAACGAGTTTTATACGTAACTGGAGAAGAAAGTGCAGATC
AAGTCAAGATGCGGGCTGATCGGTTAGGCGTTAAACACTTTGATAATCTCTACGTTTTTCCGGAAACTGATATGACGGCG
ATTCGAGAAGCGATTGCTAACGTGAAACCGGATGTCGTTATCATTGATTCCGTGCAAACCATGCAAGAAGGCGATGTGGC
CTCTGCAATTGGATCGGTTTCCCAAGTTCGAGGGGTGACTGCCGACTTAATGAACATTGCCAAAACCAACAACATTACAA
TTTTCATTGTTGGTCATGTGACGAAAGGTGGAGCAATTGCTGGTCCCAAGACTTTAGAGCATATGGTTGATACGGTGTTG
TATTTTGAAGGCGATAAGCATCATTCCTATCGTTTATTGCGGGCAGTGAAAAATCGATTTGGTTCGACCAATGAGTTAGG
AATTTTTGAAATGGTTGATAGCGGCTTAAAAGAAGTGGCTAATCCATCGGAAATTTTTCTAGAAGAACGGTTACACAATG
CGACGGGATCTGCCATTGTGGTTGCCATGGAAGGGACTCGGCCCATTTTGGTGGAATTACAAGCTTTGATTACGCCTTCC
GTCTTTGGAAACGCGCAACGAACTGCAACTGGAGTTGACCGGAATCGGGTTTCTTTGATTATGGCAGTTTTAGAAAAACG
AGCAGGCTTGATGTTACAAAATCAAGATGCTTATTTGAAAGCGGCTGGGGGCGTTAAGTTAGTCGAACCAGCGATCGATT
TAGCGATGGCCATCAGTATTGCTTCCAGTTATGAAGATATTAGTACGGATCCCAAAGAATGTTACATTGGTGAATTAGGC
CTAACTGGGGAAATTCGCCGGGTTGATCGAATTGAGCAACGAATTCGCGAAGCTGCTAAATTAGGGTTCGCTCGGGTAAT
TGTGCCCAAACATAACTTGGATGGCTTAAAGCTTGACGCGGAAATTGAAGTAGTTGGCGTCACGACCATTCGGGAAGCTT
TAAAAATTGCTTTAAAGAAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(370-432)

AAA domain (AAA_25)

(78-224)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.447

99.13

0.659
  radA Streptococcus pneumoniae D39

66.447

99.13

0.659
  radA Streptococcus pneumoniae R6

66.447

99.13

0.659
  radA Streptococcus pneumoniae TIGR4

66.447

99.13

0.659
  radA Streptococcus mitis NCTC 12261

66.228

99.13

0.657
  radA Streptococcus mitis SK321

66.228

99.13

0.657
  radA Bacillus subtilis subsp. subtilis str. 168

62.009

99.565

0.617

Multiple sequence alignment