Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACEPSR_RS06120 Genome accession   NZ_CP168714
Coordinates   1174547..1176352 (-) Length   601 a.a.
NCBI ID   WP_395319091.1    Uniprot ID   -
Organism   Fructilactobacillus frigidiflavus strain FUA3912     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1169547..1181352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSR_RS06090 trmL 1170158..1170682 (-) 525 WP_395319081.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  ACEPSR_RS06095 - 1170813..1171394 (+) 582 WP_395319082.1 copper homeostasis protein CutC -
  ACEPSR_RS06100 - 1171427..1172311 (-) 885 WP_395319084.1 RluA family pseudouridine synthase -
  ACEPSR_RS06105 - 1172304..1173113 (-) 810 WP_395319086.1 NAD kinase -
  ACEPSR_RS06110 - 1173114..1173737 (-) 624 WP_395319088.1 GTP pyrophosphokinase -
  ACEPSR_RS06115 - 1173898..1174467 (+) 570 WP_395319090.1 DsbA family protein -
  ACEPSR_RS06120 pepF 1174547..1176352 (-) 1806 WP_395319091.1 oligoendopeptidase F Regulator
  ACEPSR_RS06125 - 1176342..1177403 (-) 1062 WP_395319093.1 competence protein CoiA -
  ACEPSR_RS06130 - 1177458..1178153 (-) 696 WP_395319095.1 adaptor protein MecA -
  ACEPSR_RS06135 - 1178166..1178909 (-) 744 WP_395378696.1 MBL fold metallo-hydrolase -
  ACEPSR_RS06140 - 1178997..1179497 (+) 501 WP_395319098.1 hypothetical protein -

Sequence

Protein


Download         Length: 601 a.a.        Molecular weight: 68834.73 Da        Isoelectric Point: 5.1496

>NTDB_id=1045186 ACEPSR_RS06120 WP_395319091.1 1174547..1176352(-) (pepF) [Fructilactobacillus frigidiflavus strain FUA3912]
MTVKSIPKRNEVPENLTWDLTTIFKDEARFKVELDQVKAEVATVNQLAGKLANSADDLLQVVEKVLNLNRRFEKVYVYAH
LNHDVDTANNGAQVRMEQVEALGTKLSEATSWFDPEIINLGKVKIDAYMATQPKLTEYDRLFKMILKDEGHVLSIEAEKL
LSGASNIFNAPEKIFSMMDSSDFVFPEVKDEQGNTVRLSNGLYSLLLQSTDQNVRREAFQKFYTVFNQFKHTLAATLSSE
VAVNNYQAQVHHFSSAREQAMHENEIPAKVFTTLVKTVNDNLPLLHRYVALRKKILKISEMHMYDMYVPLAQTPDVKYTF
AESKKIMLQALQVMGPDYVKHVEEELNNRWIDVVENKGKRTGAYSSGVYDTNPYILLNWQDNLDNLYTLIHETGHSMHSY
YSSHNQPYQYGDYSIFVAEIASTTNENILTDYLLANTNDPEMKKYILSQYLEGFKGTIFRQTQFAEFENWIHEQGQLGKS
LTADVMSEKYKAINEKYYGDEIISDPEIAIEWSRIPHFYYDFYVYQYATGFGAASTLAEKISSGNQAAIDAYLNYLKSGS
SDTPINIMKRAGVDMTNSQYLEAAFAKFSQRMDELEKLIEA

Nucleotide


Download         Length: 1806 bp        

>NTDB_id=1045186 ACEPSR_RS06120 WP_395319091.1 1174547..1176352(-) (pepF) [Fructilactobacillus frigidiflavus strain FUA3912]
ATGACAGTTAAAAGTATTCCTAAACGTAATGAAGTTCCAGAAAATTTAACGTGGGACTTAACCACAATTTTTAAAGATGA
AGCAAGATTTAAGGTTGAATTGGACCAAGTTAAAGCTGAGGTGGCAACCGTTAATCAATTAGCTGGCAAATTGGCTAATA
GTGCTGATGACTTGCTCCAAGTAGTTGAAAAAGTATTGAATTTGAATCGTCGTTTTGAAAAGGTTTATGTCTATGCTCAT
TTAAATCATGATGTCGATACCGCAAATAATGGAGCCCAAGTTCGAATGGAACAAGTCGAAGCTTTGGGCACCAAATTAAG
TGAAGCAACGTCCTGGTTTGATCCAGAAATCATTAATTTAGGGAAAGTAAAAATTGATGCTTACATGGCAACCCAACCTA
AATTAACCGAATATGATCGATTATTTAAGATGATTTTGAAAGATGAAGGGCATGTCTTAAGCATTGAAGCTGAAAAACTC
CTATCAGGGGCTTCTAATATTTTTAATGCACCGGAAAAAATCTTTAGTATGATGGATAGCTCTGATTTTGTTTTTCCCGA
AGTAAAAGACGAGCAAGGTAACACGGTTCGACTCTCAAACGGGTTATACAGTTTATTACTGCAATCGACCGATCAGAATG
TTAGAAGAGAAGCTTTTCAAAAGTTCTATACGGTTTTTAATCAGTTTAAACATACCCTAGCAGCAACGTTATCATCTGAA
GTTGCTGTAAATAATTACCAAGCGCAAGTACATCATTTTAGCAGTGCCCGGGAACAGGCAATGCATGAAAACGAAATCCC
AGCAAAGGTTTTTACTACCTTAGTTAAGACGGTCAATGATAATTTGCCATTATTACATCGTTATGTAGCTTTACGCAAAA
AAATTCTAAAGATTTCTGAGATGCACATGTATGATATGTATGTTCCTTTGGCCCAAACCCCGGATGTTAAATATACATTT
GCGGAATCAAAAAAGATTATGTTACAGGCTCTACAAGTTATGGGACCTGATTATGTTAAACACGTTGAAGAAGAATTAAA
CAATCGTTGGATTGATGTAGTGGAAAATAAAGGGAAACGGACCGGGGCCTACTCATCTGGTGTTTATGACACGAATCCCT
ATATTTTATTGAATTGGCAAGATAACCTAGATAATTTGTATACTTTAATTCACGAAACCGGACACAGTATGCATAGTTAT
TATTCAAGTCATAATCAACCATATCAATATGGTGACTACTCAATTTTTGTGGCTGAAATTGCTTCGACCACTAACGAAAA
TATCCTAACCGATTATTTATTAGCGAATACCAATGATCCCGAAATGAAAAAATACATTCTTAGTCAATATTTGGAAGGGT
TCAAGGGAACAATCTTCCGGCAAACTCAATTTGCGGAATTTGAAAACTGGATTCATGAACAGGGGCAATTAGGCAAATCA
TTAACGGCGGATGTTATGAGTGAAAAATACAAAGCAATTAATGAAAAATACTACGGTGATGAAATCATTTCTGATCCAGA
AATTGCGATTGAATGGTCAAGAATTCCCCATTTTTATTACGATTTTTATGTTTATCAATATGCAACTGGATTTGGCGCAG
CTTCAACTTTAGCTGAAAAAATCAGTTCAGGAAATCAAGCTGCAATTGATGCTTATTTAAACTATTTGAAATCAGGAAGC
TCCGATACCCCAATTAACATTATGAAACGAGCCGGGGTTGATATGACGAACAGCCAATATTTAGAAGCGGCATTTGCCAA
ATTCTCGCAACGCATGGATGAATTAGAAAAATTAATTGAAGCCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(116-185)

Peptidase family M3 (Peptidase_M3)

(206-586)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.493

98.502

0.488

Multiple sequence alignment