Detailed information NTG0104518

Bioinformatically predicted

Overview

• Name: waaF
• Type: Regulator
• Locus tag: R8917_RS06075
• Genome accession: NZ_AP028344
• Coordinates: 1168594..1169544 (+)
• Length: 316 a.a.
• NCBI ID: WP_317725439.1
• Uniprot ID: -
• Organism: Campylobacter jejuni strain BCH-10331
• Function: repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1163594..1174544

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8917_RS06055 (B10331_11820)	-	1164269..1165195 (-)	927	WP_032589929.1	glycosyltransferase family 2 protein	-
R8917_RS06060 (B10331_11830)	-	1165260..1166645 (+)	1386	WP_052804524.1	hypothetical protein	-
R8917_RS06065 (B10331_11840)	-	1166647..1167723 (+)	1077	WP_079460666.1	hypothetical protein	-
R8917_RS06070 (B10331_11850)	waaV	1167720..1168535 (-)	816	WP_052804525.1	glycosyltransferase family 2 protein	-
R8917_RS06075 (B10331_11860)	waaF	1168594..1169544 (+)	951	WP_317725439.1	lipopolysaccharide heptosyltransferase II	Regulator
R8917_RS06080 (B10331_11870)	-	1169530..1170299 (-)	770	Protein_1178	glycosyltransferase family 25 protein	-
R8917_RS06085 (B10331_11880)	gmhA	1170299..1170859 (-)	561	WP_317725440.1	D-sedoheptulose 7-phosphate isomerase	-
R8917_RS06090 (B10331_11890)	rfaE1	1170856..1172241 (-)	1386	WP_032589937.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
R8917_RS06095 (B10331_11900)	rfaD	1172234..1173187 (-)	954	WP_317725441.1	ADP-glyceromanno-heptose 6-epimerase	-
R8917_RS06100 (B10331_11910)	gmhB	1173189..1173749 (-)	561	WP_052804527.1	D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase	-
R8917_RS06105 (B10331_11920)	-	1173831..1174133 (+)	303	WP_052785829.1	c-type cytochrome	-
R8917_RS06110 (B10331_11930)	ccoS	1174137..1174361 (-)	225	WP_020836832.1	cbb3-type cytochrome oxidase assembly protein CcoS	-

Sequence

Protein

• Length: 316 a.a.
• Molecular weight: 36407.91 Da
• Isoelectric Point: 10.2152

>NTDB_id=104518 R8917_RS06075 WP_317725439.1 1168594..1169544(+) (waaF) [Campylobacter jejuni strain BCH-10331]
MKIFIHLPTWLGDAVMASPALYAIKEHFKDAQFILYGSLVSTALFKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEYQVLKYLYFIENSLDIKAHFKDLKLPFKLKFQNPLILKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNENARWVHLNLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLTNI

Nucleotide

• Length: 951 bp

>NTDB_id=104518 R8917_RS06075 WP_317725439.1 1168594..1169544(+) (waaF) [Campylobacter jejuni strain BCH-10331]
ATGAAAATTTTTATACACCTTCCCACTTGGCTAGGCGATGCGGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
CTTTAAAGATGCCCAGTTTATCCTTTATGGCTCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCCAATTCTAAAATCA
TCATAGAAAATAAACAATCCCGCTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAATATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AACTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTATCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAGCCAAAGTCATGAAATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACCCAAACCTCACC
TTGGCAAAATGAAAATGCAAGATGGGTGCATTTAAATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTGAAGTGATTTTAAAAGCAATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterproScan.

• Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9) (95-294)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	93.61	99.051	0.927