Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QQG90_RS18455 Genome accession   NZ_OX637964
Coordinates   3682202..3682807 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O25b:H4-ST131 isolate 46     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3677202..3687807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQG90_RS18435 aes 3677343..3678302 (+) 960 WP_000801794.1 acetyl esterase -
  QQG90_RS18440 hemH 3678299..3679261 (-) 963 WP_001250114.1 ferrochelatase -
  QQG90_RS18445 adk 3679393..3680037 (-) 645 WP_001220233.1 adenylate kinase -
  QQG90_RS18450 htpG 3680218..3682092 (-) 1875 WP_029700694.1 molecular chaperone HtpG -
  QQG90_RS18455 recR 3682202..3682807 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QQG90_RS18460 ybaB 3682807..3683136 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QQG90_RS18465 dnaX 3683189..3685120 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  QQG90_RS18470 apt 3685249..3685800 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QQG90_RS18475 ybaN 3685953..3686330 (-) 378 WP_001188900.1 DUF454 family protein -
  QQG90_RS18480 priC 3686400..3686927 (+) 528 WP_000844862.1 primosomal replication protein N'' -
  QQG90_RS18485 rsmS 3686941..3687105 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1045129 QQG90_RS18455 WP_001195025.1 3682202..3682807(-) (recR) [Escherichia coli O25b:H4-ST131 isolate 46]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1045129 QQG90_RS18455 WP_001195025.1 3682202..3682807(-) (recR) [Escherichia coli O25b:H4-ST131 isolate 46]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment