Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QQG90_RS08805 Genome accession   NZ_OX637964
Coordinates   1845724..1846200 (-) Length   158 a.a.
NCBI ID   WP_001186200.1    Uniprot ID   -
Organism   Escherichia coli O25b:H4-ST131 isolate 46     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1840724..1851200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQG90_RS08755 yeeA 1841282..1842340 (+) 1059 WP_001200889.1 FUSC family protein -
  QQG90_RS08760 tmaR 1842512..1842841 (+) 330 WP_000450409.1 DUF496 family protein -
  QQG90_RS26925 - 1842942..1843124 (-) 183 WP_001296208.1 EutP/PduV family microcompartment system protein -
  QQG90_RS08770 - 1843244..1843324 (+) 81 WP_023441679.1 hypothetical protein -
  QQG90_RS08775 - 1843613..1843693 (-) 81 Protein_1717 hypothetical protein -
  QQG90_RS08780 yeeW 1843739..1843933 (-) 195 WP_000988600.1 DUF5983 family protein -
  QQG90_RS08785 cbtA 1843930..1844304 (-) 375 WP_000854815.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  QQG90_RS08790 cbeA 1844393..1844761 (-) 369 WP_001280918.1 type IV toxin-antitoxin system YeeU family antitoxin -
  QQG90_RS08795 - 1844777..1845421 (-) 645 WP_000086752.1 hypothetical protein -
  QQG90_RS08800 yeeT 1845440..1845661 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  QQG90_RS08805 radC 1845724..1846200 (-) 477 WP_001186200.1 RadC family protein Machinery gene
  QQG90_RS08810 - 1846216..1846689 (-) 474 WP_001542276.1 antirestriction protein -
  QQG90_RS08815 - 1846783..1847028 (-) 246 WP_001164966.1 hypothetical protein -
  QQG90_RS08820 - 1847028..1847846 (-) 819 WP_001542275.1 DUF932 domain-containing protein -
  QQG90_RS08825 - 1848067..1848477 (-) 411 WP_000846703.1 hypothetical protein -
  QQG90_RS08830 - 1848493..1848843 (-) 351 Protein_1728 hypothetical protein -
  QQG90_RS08835 istB 1848926..1849672 (-) 747 WP_001016257.1 IS21-like element ISEc12 family helper ATPase IstB -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17764.39 Da        Isoelectric Point: 7.6152

>NTDB_id=1045112 QQG90_RS08805 WP_001186200.1 1845724..1846200(-) (radC) [Escherichia coli O25b:H4-ST131 isolate 46]
MQQISFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1045112 QQG90_RS08805 WP_001186200.1 1845724..1846200(-) (radC) [Escherichia coli O25b:H4-ST131 isolate 46]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392