Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACEPST_RS02080 Genome accession   NZ_CP168704
Coordinates   350874..352256 (-) Length   460 a.a.
NCBI ID   WP_204120984.1    Uniprot ID   -
Organism   Levilactobacillus sp. FUA 3915     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 345874..357256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPST_RS02060 - 345958..346365 (-) 408 WP_125765677.1 Mini-ribonuclease 3 -
  ACEPST_RS02065 cysS 346365..347777 (-) 1413 WP_395390476.1 cysteine--tRNA ligase -
  ACEPST_RS02070 gltX 348019..349509 (-) 1491 WP_203638980.1 glutamate--tRNA ligase -
  ACEPST_RS02075 - 349662..350840 (-) 1179 WP_203644603.1 PIN/TRAM domain-containing protein -
  ACEPST_RS02080 radA 350874..352256 (-) 1383 WP_204120984.1 DNA repair protein RadA Machinery gene
  ACEPST_RS02085 - 352349..352888 (-) 540 WP_204120985.1 dUTP diphosphatase -
  ACEPST_RS02090 - 353591..353935 (+) 345 WP_203644592.1 N-acetyltransferase -
  ACEPST_RS02095 rpiA 353941..354627 (+) 687 WP_204120986.1 ribose-5-phosphate isomerase RpiA -
  ACEPST_RS02100 - 354833..355639 (+) 807 WP_204120987.1 aldo/keto reductase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49782.23 Da        Isoelectric Point: 8.0315

>NTDB_id=1045102 ACEPST_RS02080 WP_204120984.1 350874..352256(-) (radA) [Levilactobacillus sp. FUA 3915]
MAKPRTTYVCQNCDYSSPRYLGRCPNCGEWNTMMEEVVTPTAAKAKPQSTRTAVGSEQSHPQLMKDIKHSSEARTKTKME
ELNRVLGGGIVAGSLILIGGDPGIGKSTLLLQVSGQLSETGGKVLYVSGEESASQIKMRADRLVVNSDNLYLYPETDMAS
IRANIEQMQPDYVVIDSVQTMQAPGIESAIGSVSQIRAVTGELMQIAKTNNITIFVVGHVTKGGAIAGPKILEHMVDTVL
YFEGDLHHTYRILRAVKNRFGSTNELGIFEMREGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALISPS
VFGNAQRTSSGLDRNRVALLMAVLEKRANLMLQNQDAFLKAAGGVKLDEPAIDLAIALSIASSYRDTATAPTDCFVGEVG
LTGEIRRVNRIESRVAEAKKLGFKRIFVPKNNLQGWTAPKGIDVVGVSTLRQALKLALGV

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=1045102 ACEPST_RS02080 WP_204120984.1 350874..352256(-) (radA) [Levilactobacillus sp. FUA 3915]
GTGGCTAAACCAAGAACGACTTACGTATGTCAAAATTGTGATTATAGTTCACCGCGTTATCTCGGGCGTTGCCCGAACTG
TGGTGAGTGGAATACCATGATGGAAGAAGTTGTCACACCTACGGCCGCAAAGGCTAAGCCTCAGTCAACGCGGACTGCGG
TAGGTAGCGAACAATCTCATCCCCAATTAATGAAGGACATCAAGCATTCCTCAGAGGCTCGAACCAAGACCAAGATGGAA
GAGCTCAACCGGGTCTTGGGTGGCGGTATCGTGGCCGGTTCTCTCATCTTAATTGGTGGGGACCCCGGTATCGGGAAGTC
CACGTTGCTCCTGCAGGTCTCTGGCCAACTGAGTGAGACCGGTGGTAAGGTGCTGTACGTTTCCGGTGAAGAAAGTGCCT
CACAGATCAAGATGCGGGCCGACCGATTAGTCGTCAACAGCGATAACCTCTACCTCTATCCCGAGACGGACATGGCTAGC
ATCCGGGCCAACATCGAGCAGATGCAGCCGGATTATGTGGTGATTGACTCCGTCCAAACCATGCAGGCACCGGGTATTGA
GTCCGCCATTGGTTCCGTTTCACAAATTCGGGCCGTCACTGGTGAACTGATGCAGATTGCCAAGACCAATAACATTACGA
TTTTTGTGGTGGGTCACGTGACCAAGGGTGGCGCGATTGCCGGTCCTAAGATTTTGGAGCACATGGTGGATACCGTGCTC
TACTTTGAAGGAGACCTGCACCACACTTACCGGATTCTGCGGGCGGTCAAGAACCGTTTCGGCTCAACCAATGAACTGGG
GATTTTTGAAATGCGCGAGGGTGGCCTGTACGAGGTCGCCAACCCGTCGGAAATCTTCCTGGAGGAACGGCTCAAGGATG
CGACGGGTTCCGCTATTGTGGTTTCAATGGAAGGGACGCGGCCAATTCTGGTCGAAGTTCAGGCCTTGATTTCACCTTCA
GTCTTCGGAAATGCCCAGCGGACCTCCAGCGGCTTGGATCGTAACCGAGTAGCCTTGTTGATGGCGGTTCTGGAAAAACG
GGCCAACCTGATGCTCCAGAACCAGGATGCCTTCTTGAAGGCGGCTGGTGGGGTTAAGCTGGATGAACCAGCGATTGACT
TGGCCATCGCCTTGTCCATTGCCTCCAGCTATCGCGATACGGCCACGGCACCAACGGACTGCTTCGTGGGTGAAGTCGGT
TTGACTGGTGAAATTCGCCGGGTCAACCGGATTGAATCCCGGGTGGCCGAAGCCAAGAAGCTCGGTTTCAAACGAATTTT
TGTTCCTAAGAATAACCTCCAAGGTTGGACGGCGCCCAAGGGTATTGATGTCGTTGGGGTCTCCACTTTGCGGCAAGCGT
TAAAATTAGCCCTCGGCGTGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(67-224)

Subunit ChlI of Mg-chelatase (ChlI)

(366-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.154

98.913

0.654
  radA Streptococcus pneumoniae D39

66.154

98.913

0.654
  radA Streptococcus pneumoniae R6

66.154

98.913

0.654
  radA Streptococcus pneumoniae TIGR4

66.154

98.913

0.654
  radA Streptococcus mitis NCTC 12261

65.934

98.913

0.652
  radA Streptococcus mitis SK321

65.934

98.913

0.652
  radA Bacillus subtilis subsp. subtilis str. 168

63.853

100

0.641

Multiple sequence alignment