Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   QQG89_RS17545 Genome accession   NZ_OX637961
Coordinates   3582671..3583276 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli O25b:H4-ST131 isolate 86     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3577671..3588276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQG89_RS17525 aes 3577812..3578771 (+) 960 WP_000801794.1 acetyl esterase -
  QQG89_RS17530 hemH 3578768..3579730 (-) 963 WP_001250114.1 ferrochelatase -
  QQG89_RS17535 adk 3579862..3580506 (-) 645 WP_001220233.1 adenylate kinase -
  QQG89_RS17540 htpG 3580687..3582561 (-) 1875 WP_000678189.1 molecular chaperone HtpG -
  QQG89_RS17545 recR 3582671..3583276 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  QQG89_RS17550 ybaB 3583276..3583605 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  QQG89_RS17555 dnaX 3583658..3585589 (-) 1932 WP_000122044.1 DNA polymerase III subunit gamma/tau -
  QQG89_RS17560 apt 3585718..3586269 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  QQG89_RS17565 ybaN 3586422..3586799 (-) 378 WP_001188900.1 DUF454 family protein -
  QQG89_RS17570 priC 3586869..3587396 (+) 528 WP_000844862.1 primosomal replication protein N'' -
  QQG89_RS17575 rsmS 3587410..3587574 (+) 165 WP_000051144.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1045048 QQG89_RS17545 WP_001195025.1 3582671..3583276(-) (recR) [Escherichia coli O25b:H4-ST131 isolate 86]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1045048 QQG89_RS17545 WP_001195025.1 3582671..3583276(-) (recR) [Escherichia coli O25b:H4-ST131 isolate 86]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGTCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCACGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATCGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCGGTCCTGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443