Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACEPSO_RS06785 Genome accession   NZ_CP168693
Coordinates   1516335..1518143 (-) Length   602 a.a.
NCBI ID   WP_375792988.1    Uniprot ID   -
Organism   Levilactobacillus parabrevis strain FUA 30080     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1511335..1523143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSO_RS06760 - 1511868..1512779 (-) 912 WP_395323045.1 RluA family pseudouridine synthase -
  ACEPSO_RS06765 - 1512776..1513579 (-) 804 WP_020089260.1 NAD kinase -
  ACEPSO_RS06770 - 1513584..1514243 (-) 660 WP_020089259.1 GTP pyrophosphokinase family protein -
  ACEPSO_RS06775 - 1514560..1515210 (+) 651 WP_395323044.1 DsbA family protein -
  ACEPSO_RS06780 - 1515361..1516221 (+) 861 WP_395323043.1 DegV family protein -
  ACEPSO_RS06785 pepF 1516335..1518143 (-) 1809 WP_375792988.1 oligoendopeptidase F Regulator
  ACEPSO_RS06790 - 1518227..1519312 (-) 1086 WP_395323041.1 competence protein CoiA -
  ACEPSO_RS06795 trmB 1519454..1520107 (-) 654 WP_395323040.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACEPSO_RS06800 - 1520170..1520961 (-) 792 WP_395350736.1 phosphotransferase family protein -
  ACEPSO_RS06805 - 1521020..1522246 (-) 1227 WP_395323039.1 ABC transporter permease -
  ACEPSO_RS06810 - 1522243..1522977 (-) 735 WP_020089251.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67388.39 Da        Isoelectric Point: 4.7752

>NTDB_id=1045035 ACEPSO_RS06785 WP_375792988.1 1516335..1518143(-) (pepF) [Levilactobacillus parabrevis strain FUA 30080]
MKQIPERAAVPEALTWDLTPIYADDAAFKQAVAAIKAQAKQVATKQGQLAESAGDLYEVTAAIFDLNRQLEKVYVYASLK
NDQDTSDANAQALSGQAESLVATVAAATSWYEPEVLALPQVVLQALIDAEPRLTEYQHFFDVLGKQRDHTLSATEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVQLSEGLYGVLLQSTQPKVREQAFKALYSVYQQFRHTFASTLSSEVK
THNFSAEVRHYGSAREAAMSSNNVPAVVYDTLVKTVNDHLDSLHQYVNLRKEILGLPELHMYDLYTPITGEPSLSYTYPE
AQQEALKALSVLGPDYVANVQKMFDGRAIDVVENKGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPQVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQAAAGETLT
ADFMSKFYGDLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYSTGFAAATTLAQRVLSGDVAKRDAYLNYLKSGSSA
LPIEVMQKAGVDMTKPDYLETAFKTFDDRLAEFSKLARELKK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1045035 ACEPSO_RS06785 WP_375792988.1 1516335..1518143(-) (pepF) [Levilactobacillus parabrevis strain FUA 30080]
ATGAAACAAATTCCCGAACGCGCGGCAGTTCCCGAGGCTTTGACCTGGGATCTGACCCCGATTTATGCCGATGACGCGGC
CTTTAAGCAGGCCGTTGCCGCAATTAAGGCGCAAGCCAAACAGGTGGCGACCAAGCAAGGCCAACTCGCAGAAAGTGCGG
GCGACCTTTATGAAGTAACCGCCGCCATTTTTGACCTTAACCGTCAGCTGGAAAAGGTGTACGTGTATGCCTCCCTTAAA
AACGATCAAGACACCAGCGATGCCAATGCCCAAGCTTTATCTGGCCAAGCCGAAAGCTTAGTTGCAACGGTGGCTGCGGC
AACCTCCTGGTACGAACCAGAAGTACTTGCTTTGCCACAGGTCGTCTTGCAAGCGTTGATTGACGCGGAACCACGCTTAA
CTGAATATCAACACTTCTTCGATGTCTTAGGGAAACAACGCGATCACACGTTGTCTGCGACTGAGGAAAAGCTGCTGGCC
GGTGCCAGTGATATTTTCGGGGCTTCCGCCAAGACCTACAGTGTCTTGAGCGACGCCGACTTGAAGTTCCCCGTAGTTCA
GGACGAAGCGGGCAATGACGTTCAGCTTTCCGAAGGCTTATACGGCGTCTTACTGCAATCAACTCAACCAAAGGTCCGTG
AACAAGCCTTTAAAGCCCTGTACAGCGTTTATCAACAATTCCGGCATACATTTGCCAGCACGTTGTCCAGCGAGGTTAAA
ACGCATAATTTCAGTGCTGAGGTCCGGCATTACGGGAGCGCTCGTGAGGCTGCAATGAGCAGTAATAACGTGCCTGCTGT
CGTTTATGATACGCTGGTCAAGACGGTCAATGACCACTTGGATTCCCTGCATCAGTACGTGAACCTGCGTAAAGAGATTC
TCGGGTTGCCCGAACTCCACATGTATGACCTGTATACGCCGATTACGGGGGAACCCAGCCTGTCGTATACCTATCCAGAG
GCTCAGCAGGAAGCGCTCAAGGCCCTCAGTGTGCTGGGCCCAGATTACGTGGCCAACGTGCAGAAGATGTTTGATGGCCG
TGCAATTGATGTGGTTGAAAACAAGGGTAAGCGGACTGGCGCTTATTCCGGTGGGATGTATGACACCAAGCCTTACATCC
TCCTGAACTGGCAGGATAGCCTGGAAAGTCTGTTCACATTGGTTCACGAAATGGGTCATAGCATGCACAGCCACTATACC
CGGACCAATCAACCTTACCAATACGGGGATTACTCGATCTTTGTGGCGGAAATTGCATCAACGACTAACGAAAATCTTCT
AACGGATTACCTATTAAAGACGCAGACGGACCCACAAGTTAGAGCCTACGTTCTGAATCATTACCTGGATGGCTTCAAGG
GAACGGTCTACCGTCAAACCCAGTTTGCTGAATTTGAAGATTACATTCACCAACAAGCAGCAGCCGGTGAGACGTTGACC
GCGGACTTCATGAGTAAGTTCTACGGTGACCTGAACCAGCGCTACTATGGCGATGGGGTCATCTCTGATCCCCAGATTGC
GGACGAATGGACGCGAATCCCACACTTCTATTATGACTACTACGTTTATCAGTATTCCACTGGATTTGCGGCCGCAACCA
CATTGGCCCAACGCGTCCTGAGTGGGGATGTCGCTAAGCGTGATGCCTACCTGAACTACTTGAAGTCTGGGAGCTCCGCT
TTACCAATTGAAGTGATGCAAAAGGCAGGGGTCGACATGACCAAGCCAGATTATTTGGAAACGGCATTTAAGACCTTCGA
CGACCGACTGGCTGAATTCAGTAAGTTAGCGCGTGAGTTGAAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(114-183)

Peptidase family M3 (Peptidase_M3)

(204-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.422

98.505

0.497

Multiple sequence alignment