Detailed information NTG1045015

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QQG89_RS05570
• Genome accession: NZ_OX637961
• Coordinates: 1157714..1158706 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli O25b:H4-ST131 isolate 86
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1152714..1163706

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QQG89_RS05540	ispD	1152775..1153485 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QQG89_RS05545	ispF	1153485..1153964 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QQG89_RS05550	truD	1153961..1155010 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QQG89_RS05555	surE	1154991..1155752 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QQG89_RS05560	pcm	1155746..1156372 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QQG89_RS05565	nlpD	1156557..1157651 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QQG89_RS05570	rpoS	1157714..1158706 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QQG89_RS05575	-	1158877..1159428 (-)	552	WP_001179444.1	flavodoxin family protein	-
QQG89_RS05580	-	1159653..1160696 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QQG89_RS05585	ygbN	1160839..1162203 (-)	1365	WP_000104433.1	GntP family transporter	-
QQG89_RS05590	ygbM	1162292..1163068 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=1045015 QQG89_RS05570 WP_000081550.1 1157714..1158706(+) (rpoS) [Escherichia coli O25b:H4-ST131 isolate 86]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=1045015 QQG89_RS05570 WP_000081550.1 1157714..1158706(+) (rpoS) [Escherichia coli O25b:H4-ST131 isolate 86]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715