Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACEPSN_RS02880 Genome accession   NZ_CP168691
Coordinates   614197..615573 (+) Length   458 a.a.
NCBI ID   WP_260338811.1    Uniprot ID   -
Organism   Levilactobacillus parabrevis strain FUA 30081     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 609197..620573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSN_RS02855 - 609710..611044 (-) 1335 WP_020090345.1 C1 family peptidase -
  ACEPSN_RS02860 - 611260..612066 (-) 807 WP_395321329.1 aldo/keto reductase -
  ACEPSN_RS02865 rpiA 612260..612946 (-) 687 WP_020090343.1 ribose-5-phosphate isomerase RpiA -
  ACEPSN_RS02870 - 612952..613290 (-) 339 WP_395321327.1 acetyltransferase -
  ACEPSN_RS02875 - 613563..614102 (+) 540 WP_395321325.1 dUTP diphosphatase -
  ACEPSN_RS02880 radA 614197..615573 (+) 1377 WP_260338811.1 DNA repair protein RadA Machinery gene
  ACEPSN_RS02885 - 615929..617095 (+) 1167 WP_020090339.1 PIN/TRAM domain-containing protein -
  ACEPSN_RS02890 gltX 617246..618736 (+) 1491 WP_020090338.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 49655.21 Da        Isoelectric Point: 7.7036

>NTDB_id=1044996 ACEPSN_RS02880 WP_260338811.1 614197..615573(+) (radA) [Levilactobacillus parabrevis strain FUA 30081]
MAKTKTKFVCQNCDYSSPRYLGRCPNCGEWNTMVEEVITPAAAKPQSTRTTVTGEHSKPQLMNDIKHTTEMRVKTQMNEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSATGGKVLYVSGEESASQIKMRADRLVVNSDNLYLYPETDMASIR
ANIEEMQPDYVVIDSVQTMQAPGIESAIGSVSQIRAVTGELMQIAKTNGITIFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHTYRILRAVKNRFGSTNELGIFEMREGGLYEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALISPSVF
GNAQRTSSGLDRNRVALLMAVLEKRANLMLQNQDAFLKAAGGVKLDEPAIDLAIAMSIASSYRDTATEPSDCFVGEVGLT
GEIRRVSRIESRVAEAKKLGFKRIFVPKNNMQGWNPPAGIKVVGVSTLRQALKLALDI

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=1044996 ACEPSN_RS02880 WP_260338811.1 614197..615573(+) (radA) [Levilactobacillus parabrevis strain FUA 30081]
GTGGCTAAAACGAAAACGAAATTTGTCTGTCAGAATTGTGATTATAGCTCCCCCCGGTACCTGGGACGCTGCCCCAATTG
TGGGGAGTGGAACACCATGGTCGAAGAGGTTATCACGCCGGCTGCGGCCAAGCCTCAGTCAACACGAACGACGGTGACTG
GCGAGCATTCTAAGCCACAATTGATGAATGACATCAAGCACACGACGGAAATGCGGGTCAAGACCCAAATGAACGAACTT
AACCGGGTGCTGGGTGGCGGTATCGTACCCGGGTCATTGATCCTGATTGGTGGAGATCCCGGTATTGGGAAATCGACGCT
GCTGCTCCAAGTGTCCGGCCAGTTGAGTGCGACCGGGGGCAAGGTGCTCTACGTGTCCGGGGAAGAAAGTGCTTCGCAGA
TCAAGATGCGTGCCGACCGGTTAGTCGTCAATAGCGACAACCTCTACCTCTATCCGGAGACGGACATGGCTAGTATTCGG
GCCAACATTGAAGAGATGCAACCAGATTACGTGGTCATTGACTCCGTGCAAACCATGCAGGCCCCAGGGATCGAATCGGC
AATTGGGTCGGTTTCTCAGATTCGGGCGGTGACTGGTGAGCTGATGCAGATTGCCAAGACTAACGGCATTACGATTTTTG
TCGTGGGTCACGTGACTAAGGGTGGCGCGATTGCCGGTCCTAAGATTCTGGAACACATGGTGGATACCGTGCTGTACTTT
GAAGGGGACCTGCATCACACCTACCGGATTCTGCGAGCGGTCAAGAACCGATTTGGCTCGACCAATGAGCTGGGAATCTT
TGAAATGCGTGAGGGTGGTCTCTATGAGGTGGCCAATCCTTCGGAGATCTTCTTGGAGGAACGGCTAAAGGATGCGACTG
GTTCGGCCATTGTAGTTTCGATGGAAGGAACTCGGCCTATCCTGGTCGAAGTGCAAGCACTGATTTCACCATCGGTCTTC
GGTAACGCCCAACGGACATCGAGTGGCTTGGATCGCAACCGAGTGGCTTTACTGATGGCCGTATTGGAGAAGCGCGCCAA
CCTGATGCTTCAGAATCAAGACGCTTTTCTGAAGGCCGCTGGTGGTGTGAAGTTGGATGAACCAGCGATTGACTTGGCGA
TTGCCATGAGCATTGCCTCCAGTTACCGTGACACGGCAACGGAACCCAGTGACTGCTTCGTGGGTGAAGTGGGGTTGACT
GGTGAAATTCGCCGGGTCAGCCGCATTGAGTCCCGGGTAGCAGAAGCCAAGAAGCTTGGCTTCAAACGAATCTTCGTGCC
TAAGAACAACATGCAAGGATGGAATCCACCGGCCGGCATCAAGGTCGTCGGGGTCTCAACCCTGCGTCAGGCATTGAAAC
TAGCACTGGATATTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-222)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

66.446

98.908

0.657
  radA Streptococcus mitis NCTC 12261

66.225

98.908

0.655
  radA Streptococcus pneumoniae Rx1

66.225

98.908

0.655
  radA Streptococcus pneumoniae TIGR4

66.225

98.908

0.655
  radA Streptococcus pneumoniae D39

66.225

98.908

0.655
  radA Streptococcus pneumoniae R6

66.225

98.908

0.655
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

99.563

0.651

Multiple sequence alignment