Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACEPSU_RS05535 Genome accession   NZ_CP168688
Coordinates   1153417..1155225 (+) Length   602 a.a.
NCBI ID   WP_395323042.1    Uniprot ID   -
Organism   Levilactobacillus parabrevis strain FUA 30082     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1148417..1160225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSU_RS05510 - 1148583..1149317 (+) 735 WP_020089251.1 ABC transporter ATP-binding protein -
  ACEPSU_RS05515 - 1149314..1150540 (+) 1227 WP_395323039.1 ABC transporter permease -
  ACEPSU_RS05520 - 1150599..1151390 (+) 792 WP_260339953.1 phosphotransferase family protein -
  ACEPSU_RS05525 trmB 1151453..1152106 (+) 654 WP_395323040.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  ACEPSU_RS05530 - 1152248..1153333 (+) 1086 WP_395323041.1 competence protein CoiA -
  ACEPSU_RS05535 pepF 1153417..1155225 (+) 1809 WP_395323042.1 oligoendopeptidase F Regulator
  ACEPSU_RS05540 - 1155339..1156199 (-) 861 WP_395323043.1 DegV family protein -
  ACEPSU_RS05545 - 1156350..1157000 (-) 651 WP_395323044.1 DsbA family protein -
  ACEPSU_RS05550 - 1157317..1157976 (+) 660 WP_020089259.1 GTP pyrophosphokinase family protein -
  ACEPSU_RS05555 - 1157981..1158784 (+) 804 WP_395361628.1 NAD kinase -
  ACEPSU_RS05560 - 1158781..1159692 (+) 912 WP_395323045.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 67387.40 Da        Isoelectric Point: 4.8156

>NTDB_id=1044979 ACEPSU_RS05535 WP_395323042.1 1153417..1155225(+) (pepF) [Levilactobacillus parabrevis strain FUA 30082]
MKQIPERAAVPEALTWDLTPIYADDAAFKQAVAAIKAQAKQVATKQGQLAESAGDLYEVTAAIFDLNRQLEKVYVYASLK
NDQDTSDANAQALSGQAESLVATVAAATSWYEPEVLALPQVVLQALIDAEPRLTEYQHFFDVLGKQRDHTLSATEEKLLA
GASDIFGASAKTYSVLSDADLKFPVVQDEAGNDVQLSEGLYGVLLQSTQPKVREQAFKALYSVYQQFRHTFASTLSSEVK
THNFSAEVRHYGSAREAAMSSNNVPAVVYDTLVKTVNDHLDSLHQYVNLRKEILGLPELHMYDLYTPITGEPSLSYTYPE
AQQEALKALSVLGPDYVANVQKMFDGRAIDVVENKGKRTGAYSGGMYDTKPYILLNWQDSLESLFTLVHEMGHSMHSHYT
RTNQPYQYGDYSIFVAEIASTTNENLLTDYLLKTQTDPQVRAYVLNHYLDGFKGTVYRQTQFAEFEDYIHQQAAAGETLT
ADFMSKFYGDLNQRYYGDGVISDPQIADEWTRIPHFYYDYYVYQYSTGFAAATTLAQRVLSGDVAKRDAYLNYLKSGSSA
LPIEVMQKAGVNMTKPDYLETAFKTFDDRLAEFSKLARELKK

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1044979 ACEPSU_RS05535 WP_395323042.1 1153417..1155225(+) (pepF) [Levilactobacillus parabrevis strain FUA 30082]
ATGAAACAAATTCCCGAACGCGCGGCAGTTCCCGAGGCTTTGACCTGGGATCTGACCCCGATTTATGCCGATGACGCGGC
CTTTAAGCAGGCCGTTGCCGCAATTAAGGCGCAAGCCAAACAGGTGGCGACCAAGCAAGGCCAACTCGCAGAAAGTGCGG
GCGACCTTTATGAAGTAACCGCCGCCATTTTTGACCTTAACCGTCAGCTGGAAAAGGTGTACGTGTATGCCTCCCTTAAA
AACGATCAAGACACCAGCGATGCCAATGCCCAAGCTTTATCTGGCCAAGCCGAAAGCTTAGTTGCAACGGTGGCTGCGGC
AACCTCCTGGTACGAACCAGAAGTACTTGCTTTGCCACAGGTCGTCTTGCAAGCGTTGATTGACGCGGAACCACGCTTAA
CTGAATATCAACACTTCTTCGATGTCTTAGGGAAACAACGCGATCACACGTTGTCTGCGACTGAGGAAAAGCTGCTGGCC
GGTGCCAGTGATATTTTCGGGGCTTCCGCCAAGACCTACAGTGTCTTGAGCGACGCCGACTTGAAGTTCCCCGTAGTTCA
GGACGAAGCGGGCAATGACGTTCAGCTTTCCGAAGGCTTATACGGCGTCTTACTGCAATCAACTCAACCAAAGGTCCGTG
AACAAGCCTTTAAAGCCCTGTACAGCGTTTATCAACAATTCCGGCATACATTTGCCAGCACGTTGTCCAGCGAGGTTAAA
ACGCATAATTTCAGTGCTGAGGTCCGGCATTACGGGAGCGCTCGTGAGGCTGCAATGAGCAGTAATAACGTGCCTGCTGT
CGTTTATGATACGCTGGTCAAGACGGTCAATGACCACTTGGATTCCCTGCATCAGTACGTGAACCTGCGTAAAGAGATTC
TCGGGTTGCCCGAACTCCACATGTATGACCTGTATACGCCGATTACGGGGGAACCCAGCCTGTCGTATACCTATCCAGAG
GCTCAGCAGGAAGCGCTCAAGGCCCTCAGTGTGCTGGGCCCAGATTACGTGGCCAACGTGCAGAAGATGTTTGATGGCCG
TGCAATTGATGTGGTTGAAAACAAGGGTAAGCGGACTGGCGCTTATTCCGGTGGGATGTATGACACCAAGCCTTACATCC
TCCTGAACTGGCAGGATAGCCTGGAAAGTCTGTTCACATTGGTTCACGAAATGGGTCATAGCATGCACAGCCACTATACC
CGGACCAATCAACCTTACCAATACGGGGATTACTCGATCTTTGTGGCGGAAATTGCATCAACGACTAACGAAAATCTTCT
AACGGATTACCTATTAAAGACGCAGACGGACCCACAAGTTAGAGCCTACGTTCTGAATCATTACCTGGATGGCTTCAAGG
GAACGGTCTACCGTCAAACCCAGTTTGCTGAATTTGAAGATTACATTCACCAACAAGCAGCAGCCGGTGAGACGTTGACC
GCGGACTTCATGAGTAAGTTCTACGGTGACCTGAACCAGCGCTACTATGGCGATGGGGTCATCTCTGATCCCCAGATTGC
GGACGAATGGACGCGAATCCCACACTTCTATTATGACTACTACGTTTATCAGTATTCCACTGGATTTGCGGCCGCAACCA
CATTGGCCCAACGCGTCCTGAGTGGGGATGTCGCTAAGCGTGATGCCTACCTGAACTACTTGAAGTCTGGGAGCTCCGCT
TTACCAATTGAAGTGATGCAAAAGGCAGGGGTCAACATGACCAAGCCAGATTATTTGGAAACGGCATTTAAGACCTTCGA
CGACCGACTGGCTGAATTCAGTAAGTTAGCGCGTGAGTTGAAGAAGTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(204-584)

Oligopeptidase F (Peptidase_M3_N)

(114-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.253

98.505

0.495

Multiple sequence alignment