Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QQG88_RS12990 Genome accession   NZ_OX637959
Coordinates   2692225..2692677 (-) Length   150 a.a.
NCBI ID   WP_000177771.1    Uniprot ID   -
Organism   Escherichia coli O25b:H4-ST131 isolate 32     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2687225..2697677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQG88_RS12965 - 2688817..2689671 (-) 855 WP_001000136.1 hypothetical protein -
  QQG88_RS12970 - 2689759..2690226 (-) 468 WP_000658784.1 hypothetical protein -
  QQG88_RS12975 - 2690228..2690425 (-) 198 WP_001095670.1 AlpA family transcriptional regulator -
  QQG88_RS12980 - 2690648..2691262 (+) 615 WP_000580009.1 hypothetical protein -
  QQG88_RS12985 - 2691249..2692178 (-) 930 WP_023141324.1 site-specific integrase -
  QQG88_RS12990 radC 2692225..2692677 (-) 453 WP_000177771.1 DNA repair protein RadC Machinery gene
  QQG88_RS12995 - 2692679..2693140 (-) 462 WP_000954131.1 hypothetical protein -
  QQG88_RS13000 - 2693260..2693652 (-) 393 WP_063270541.1 DUF2787 family protein -
  QQG88_RS13005 - 2694007..2694495 (-) 489 WP_000095786.1 hypothetical protein -
  QQG88_RS13010 - 2694617..2694886 (+) 270 WP_001531625.1 helix-turn-helix domain-containing protein -
  QQG88_RS13015 - 2694898..2695425 (+) 528 WP_000246193.1 hypothetical protein -
  QQG88_RS13020 - 2695440..2695799 (+) 360 WP_001080418.1 hypothetical protein -
  QQG88_RS13025 - 2695830..2696165 (+) 336 WP_000816505.1 hypothetical protein -

Sequence

Protein


Download         Length: 150 a.a.        Molecular weight: 17256.99 Da        Isoelectric Point: 6.6015

>NTDB_id=1044952 QQG88_RS12990 WP_000177771.1 2692225..2692677(-) (radC) [Escherichia coli O25b:H4-ST131 isolate 32]
MTMFTQRETRILDQARDIISRYYQRGVQLCSPDDVRRCVMVELAPLEHEEFGIILLDNQNQLLHREILFRGTLNSVSVHP
REVIKRVLKHNAAAVILVHNHPSGEPEPSRCDIQLTKKLQELLEILDVRLLDHFIVAGTETVSMAERGLV

Nucleotide


Download         Length: 453 bp        

>NTDB_id=1044952 QQG88_RS12990 WP_000177771.1 2692225..2692677(-) (radC) [Escherichia coli O25b:H4-ST131 isolate 32]
ATGACCATGTTTACCCAGCGTGAAACCCGTATCCTTGACCAGGCGCGTGACATTATTAGCCGGTACTACCAGCGTGGGGT
TCAACTCTGTTCCCCTGATGATGTTCGACGGTGCGTGATGGTTGAGCTGGCACCGCTTGAACATGAAGAGTTTGGCATCA
TCCTACTCGATAATCAGAATCAGCTGCTGCACCGCGAAATCCTGTTCAGGGGTACGCTAAACTCGGTCAGCGTTCACCCC
CGTGAAGTTATTAAGCGTGTGCTGAAACATAACGCCGCCGCCGTCATCCTTGTCCATAATCACCCCAGCGGCGAGCCTGA
ACCCAGCCGGTGTGACATCCAGTTGACCAAAAAGCTTCAGGAGCTGCTGGAAATACTGGATGTGCGGTTACTTGATCACT
TTATCGTGGCAGGAACTGAAACGGTGTCGATGGCTGAGCGAGGACTGGTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(31-149)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

46.218

79.333

0.367