Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACEPSY_RS07305 Genome accession   NZ_CP168681
Coordinates   1474258..1476060 (+) Length   600 a.a.
NCBI ID   WP_068805423.1    Uniprot ID   A0AAP5TE32
Organism   Pediococcus parvulus strain FUA 3699     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1469258..1481060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSY_RS07275 - 1469263..1469937 (-) 675 WP_395387022.1 helix-turn-helix domain-containing protein -
  ACEPSY_RS07280 - 1470040..1470549 (-) 510 WP_260274560.1 monooxygenase -
  ACEPSY_RS07285 - 1470698..1471438 (+) 741 WP_057784612.1 MBL fold metallo-hydrolase -
  ACEPSY_RS07290 spxA 1471770..1472168 (+) 399 WP_057784613.1 transcriptional regulator SpxA -
  ACEPSY_RS07295 - 1472293..1473006 (+) 714 WP_057784614.1 adaptor protein MecA -
  ACEPSY_RS07300 - 1473107..1474216 (+) 1110 WP_395387023.1 competence protein CoiA -
  ACEPSY_RS07305 pepF 1474258..1476060 (+) 1803 WP_068805423.1 oligoendopeptidase F Regulator
  ACEPSY_RS07310 - 1476142..1476756 (-) 615 WP_057784617.1 DsbA family protein -
  ACEPSY_RS07315 - 1477032..1477682 (+) 651 WP_057784618.1 GTP pyrophosphokinase family protein -
  ACEPSY_RS07320 - 1477688..1478494 (+) 807 WP_057784619.1 NAD kinase -
  ACEPSY_RS07325 - 1478484..1479389 (+) 906 WP_068805433.1 RluA family pseudouridine synthase -
  ACEPSY_RS07330 mgtE 1479408..1480760 (+) 1353 WP_057784621.1 magnesium transporter -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68466.97 Da        Isoelectric Point: 5.3646

>NTDB_id=1044937 ACEPSY_RS07305 WP_068805423.1 1474258..1476060(+) (pepF) [Pediococcus parvulus strain FUA 3699]
MAEIKQLPKRSDVPVELTWDLTTIFKDDRAVKTAMTQLKVGVQAVLTQQGKLQDSAQNLLKVIQDELNVQNQLEHLFVYA
ELKNDQDTGDNTNQGLKDQITGLVAKASAQLAWIEPEILAIPNQKLTEFQNNESELKPYEHFLAVLRLKKDHVLSAKEEA
ILAGASSIFGSSEKVFGILDNSDLKFPFVKNSAGQTVQLSQGMYSTLLQSTNQVVRKQAFEQLYAVYEQFRNTFAATLSG
EVKVHNFNAQIRGFKDARQAAMSENAIPDAVYTNLVTEVNSHLDLLHRYVGLRKKILNLKEMHMYDLYTPITGKSPLSYT
YQKAQTEAKEALQIMGDDYVSHVDEAFKNRWIDVVENQGKRSGAYSSGVYGTNPFMLLNWQDDLDNLFTLVHEMGHSMHT
YYTTHNQPYQYGDYAIFVAEIASTTNENILTSYLLDKYDDPQIKLYVLNHYLDDFKGTVYRQTQFAEFEQFIHEADAKGE
PLTAEMMSNYYGDLNHRYYGDAVINDDQIKSEWTRIPHFYYNFYVYQYATGFAAASSLANGITTHQAHARENYLNYLKSG
SSDFPLNVMKKAGVDMTRKAYLEDAFAVFEKRLNEFESLL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1044937 ACEPSY_RS07305 WP_068805423.1 1474258..1476060(+) (pepF) [Pediococcus parvulus strain FUA 3699]
ATGGCAGAGATAAAACAGTTACCGAAACGTAGTGATGTGCCAGTTGAGTTAACGTGGGATTTAACCACAATTTTTAAGGA
CGATCGAGCCGTGAAAACGGCAATGACACAATTGAAAGTAGGGGTACAAGCTGTACTAACCCAACAAGGAAAGCTACAAG
ATAGTGCCCAAAATTTACTAAAAGTGATTCAAGACGAACTAAATGTTCAAAACCAATTGGAACATTTATTTGTTTATGCA
GAGTTAAAAAATGATCAAGATACTGGGGACAACACAAATCAGGGCTTAAAAGACCAAATCACGGGACTAGTAGCAAAAGC
TTCTGCTCAATTAGCTTGGATTGAACCTGAAATTTTGGCAATTCCAAATCAAAAACTGACTGAGTTTCAAAATAATGAAT
CAGAGTTAAAACCATATGAACATTTCTTAGCTGTTTTGCGGTTAAAGAAGGATCATGTGTTATCCGCAAAAGAAGAAGCC
ATATTAGCAGGTGCGAGTTCCATTTTTGGTTCCTCTGAAAAAGTGTTTGGAATTTTGGATAATTCGGATTTGAAATTTCC
ATTTGTGAAAAATTCGGCTGGTCAAACGGTACAGCTTTCACAAGGGATGTATTCAACTTTGCTTCAATCAACAAACCAAG
TAGTTCGAAAGCAAGCTTTTGAGCAGTTATACGCTGTCTATGAGCAATTTAGAAATACATTTGCCGCAACCTTATCAGGT
GAAGTTAAGGTGCATAATTTTAATGCACAAATTCGCGGTTTTAAAGATGCCCGGCAGGCTGCCATGAGTGAAAATGCCAT
CCCAGACGCCGTGTATACTAACCTAGTCACTGAAGTGAATTCACATCTAGATTTGTTGCATCGGTATGTTGGTTTGAGAA
AGAAAATTCTTAATTTAAAAGAAATGCATATGTACGATCTGTATACGCCGATTACTGGGAAATCGCCATTAAGCTACACT
TATCAAAAGGCCCAAACTGAAGCTAAAGAAGCTTTGCAGATCATGGGTGATGATTATGTGAGTCATGTTGATGAAGCCTT
CAAAAATCGCTGGATTGATGTAGTTGAAAATCAAGGAAAGCGCAGCGGGGCATATTCTTCAGGTGTCTATGGTACAAATC
CGTTCATGTTGTTAAATTGGCAAGATGATTTAGACAATTTGTTTACTTTGGTTCATGAAATGGGTCATAGTATGCATACG
TATTACACTACCCACAATCAGCCTTATCAATATGGCGATTATGCAATTTTTGTGGCTGAGATAGCCTCCACTACAAACGA
GAACATTTTGACATCATATTTATTGGATAAGTATGATGATCCACAAATTAAACTCTATGTTTTGAACCATTATTTAGATG
ACTTCAAGGGGACTGTTTATCGTCAGACTCAATTTGCTGAGTTTGAACAATTTATTCATGAAGCGGATGCAAAGGGAGAG
CCATTAACGGCCGAAATGATGTCAAATTACTATGGTGATCTAAATCATCGTTATTATGGGGATGCAGTGATTAACGATGA
TCAAATTAAATCTGAATGGACACGAATCCCGCATTTTTATTATAATTTTTATGTTTATCAGTATGCAACAGGGTTTGCAG
CGGCTTCCTCACTGGCAAACGGGATCACAACACATCAGGCTCATGCGCGGGAAAATTATTTAAACTATTTAAAATCTGGT
AGTTCTGATTTTCCACTGAATGTTATGAAAAAAGCTGGCGTAGATATGACTCGAAAGGCCTATTTAGAAGACGCCTTTGC
GGTTTTTGAGAAGCGTTTAAACGAGTTTGAAAGTTTGTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.761

98.5

0.5

Multiple sequence alignment