Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACEPSY_RS05785 Genome accession   NZ_CP168681
Coordinates   1190390..1191760 (+) Length   456 a.a.
NCBI ID   WP_395386935.1    Uniprot ID   -
Organism   Pediococcus parvulus strain FUA 3699     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1185390..1196760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSY_RS05755 - 1185471..1186145 (+) 675 WP_100078201.1 helix-turn-helix domain-containing protein -
  ACEPSY_RS05760 - 1186142..1187035 (+) 894 WP_395386934.1 IS3 family transposase -
  ACEPSY_RS05765 - 1187139..1188473 (-) 1335 WP_229923094.1 C1 family peptidase -
  ACEPSY_RS05770 rpiA 1188574..1189260 (-) 687 WP_057784531.1 ribose-5-phosphate isomerase RpiA -
  ACEPSY_RS05775 - 1189247..1189573 (-) 327 WP_057784530.1 GNAT family N-acetyltransferase -
  ACEPSY_RS05780 - 1189772..1190308 (+) 537 WP_057784529.1 dUTP diphosphatase -
  ACEPSY_RS05785 radA 1190390..1191760 (+) 1371 WP_395386935.1 DNA repair protein RadA Machinery gene
  ACEPSY_RS05790 - 1191791..1192909 (+) 1119 WP_068806213.1 PIN/TRAM domain-containing protein -
  ACEPSY_RS05795 gltX 1192993..1194483 (+) 1491 WP_057784526.1 glutamate--tRNA ligase -
  ACEPSY_RS05800 cysS 1194593..1195999 (+) 1407 WP_260274835.1 cysteine--tRNA ligase -
  ACEPSY_RS05805 - 1196006..1196425 (+) 420 WP_057784524.1 Mini-ribonuclease 3 -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50121.60 Da        Isoelectric Point: 7.7961

>NTDB_id=1044930 ACEPSY_RS05785 WP_395386935.1 1190390..1191760(+) (radA) [Pediococcus parvulus strain FUA 3699]
MAKEKTQFVCQNCGYVSPRFLGRCPSCGQWNTLVEERVESEKVNHKARVSFEGNRAKPQLISQVDMSETPRVKTGLDEFN
RVLGGGIVTGSLVLIGGDPGIGKSTLLLQISGQLSETKHRVLYVSGEESAAQIKMRADRLHVASENFYLFPETDMNSIQA
AIKELKPTYVIIDSIQTMQEPDIQSAVGSVAQVREITAELMQIAKTNNITIFIVGHVTKGGAIAGPKILEHMVDTVLYFE
GDLHHTYRILRAVKNRFGSTNELGIFEMRETGLQEVANPSEIFLEERLKDATGSAIVVSMEGTRPILVEVQALITPTTFG
NAKRTASGLDHNRVSLIMAVLEKRANFLLQNQDAYLKAAGGVKLNEPAIDLAIAISIASSYRDKGTDPMDAFVGEIGLTG
EIRRVNRIEQRVAEAQKLGFKRIYLPKNNLQGWTPPTGIEVVGVATLSDALRRIFK

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1044930 ACEPSY_RS05785 WP_395386935.1 1190390..1191760(+) (radA) [Pediococcus parvulus strain FUA 3699]
ATGGCAAAAGAAAAGACTCAGTTTGTCTGTCAAAATTGTGGCTACGTTTCGCCTCGATTTTTAGGCCGGTGTCCAAGTTG
TGGTCAATGGAACACTTTGGTTGAAGAGCGGGTTGAAAGCGAAAAAGTTAATCACAAAGCTCGAGTTAGTTTCGAAGGTA
ACCGAGCCAAACCGCAACTAATTAGCCAAGTTGATATGAGTGAAACTCCCCGTGTAAAAACAGGTTTGGATGAGTTTAAC
CGAGTTTTAGGCGGTGGTATTGTAACTGGATCACTTGTTTTGATTGGTGGTGATCCAGGAATCGGAAAATCAACATTGCT
TTTGCAAATTTCTGGTCAACTAAGCGAAACAAAGCATCGCGTTTTATATGTATCTGGGGAAGAAAGTGCTGCCCAAATCA
AAATGCGTGCCGACCGTTTACATGTTGCTAGTGAGAATTTTTATTTGTTCCCAGAAACTGACATGAATAGCATCCAAGCG
GCTATCAAAGAACTCAAACCAACCTATGTGATTATCGATTCGATTCAGACAATGCAGGAGCCGGATATCCAATCTGCTGT
TGGTAGTGTAGCGCAAGTTCGTGAGATCACTGCCGAACTGATGCAGATTGCAAAAACTAACAATATTACAATTTTTATTG
TCGGTCATGTGACTAAGGGCGGTGCAATTGCGGGGCCGAAGATCTTGGAGCATATGGTGGATACAGTTCTTTACTTTGAA
GGCGATTTGCATCACACTTATCGGATTCTTCGGGCCGTAAAGAACCGATTTGGTTCAACTAATGAACTGGGAATTTTTGA
AATGCGTGAAACGGGTTTGCAAGAGGTTGCCAATCCTTCAGAAATTTTCTTGGAAGAACGGCTAAAAGATGCTACGGGTT
CCGCCATCGTGGTTTCAATGGAAGGGACACGACCAATTTTGGTTGAAGTCCAAGCTTTAATCACGCCCACTACTTTTGGT
AATGCAAAACGCACAGCTAGTGGACTGGATCATAACCGAGTTTCTTTGATTATGGCAGTTTTGGAAAAACGGGCTAATTT
TTTGCTGCAGAACCAAGATGCGTATTTAAAAGCTGCCGGTGGTGTCAAGTTGAATGAACCGGCAATTGATTTAGCTATTG
CAATTAGTATTGCGTCTAGTTACCGCGATAAGGGAACGGACCCGATGGACGCATTTGTGGGTGAAATTGGATTGACGGGT
GAAATTCGCCGGGTAAACCGAATTGAACAACGGGTGGCTGAGGCTCAAAAGCTGGGCTTCAAACGTATTTATTTGCCTAA
AAACAACCTTCAAGGATGGACACCACCAACTGGTATCGAGGTTGTGGGTGTCGCAACTTTGTCAGATGCGTTGCGAAGAA
TTTTTAAATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(73-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus mitis SK321

67.912

99.781

0.678
  radA Streptococcus mitis NCTC 12261

67.692

99.781

0.675
  radA Streptococcus pneumoniae Rx1

67.692

99.781

0.675
  radA Streptococcus pneumoniae TIGR4

67.692

99.781

0.675
  radA Streptococcus pneumoniae D39

67.692

99.781

0.675
  radA Streptococcus pneumoniae R6

67.692

99.781

0.675
  radA Bacillus subtilis subsp. subtilis str. 168

67.108

99.342

0.667

Multiple sequence alignment