Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ACEPSX_RS09010 Genome accession   NZ_CP168679
Coordinates   1817079..1818881 (-) Length   600 a.a.
NCBI ID   WP_068805423.1    Uniprot ID   A0AAP5TE32
Organism   Pediococcus parvulus strain FUA 30084     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1812079..1823881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPSX_RS08985 mgtE 1812379..1813731 (-) 1353 WP_057784621.1 magnesium transporter -
  ACEPSX_RS08990 - 1813750..1814655 (-) 906 WP_068805433.1 RluA family pseudouridine synthase -
  ACEPSX_RS08995 - 1814645..1815451 (-) 807 WP_057784619.1 NAD kinase -
  ACEPSX_RS09000 - 1815457..1816107 (-) 651 WP_057784618.1 GTP pyrophosphokinase family protein -
  ACEPSX_RS09005 - 1816383..1816997 (+) 615 WP_057784617.1 DsbA family protein -
  ACEPSX_RS09010 pepF 1817079..1818881 (-) 1803 WP_068805423.1 oligoendopeptidase F Regulator
  ACEPSX_RS09015 - 1818923..1820032 (-) 1110 WP_395387023.1 competence protein CoiA -
  ACEPSX_RS09020 - 1820133..1820846 (-) 714 WP_057784614.1 adaptor protein MecA -
  ACEPSX_RS09025 spxA 1820971..1821369 (-) 399 WP_057784613.1 transcriptional regulator SpxA -
  ACEPSX_RS09030 - 1821701..1822441 (-) 741 WP_057784612.1 MBL fold metallo-hydrolase -
  ACEPSX_RS09035 - 1822590..1823099 (+) 510 WP_260274560.1 monooxygenase -
  ACEPSX_RS09040 - 1823202..1823876 (+) 675 WP_395387022.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68466.97 Da        Isoelectric Point: 5.3646

>NTDB_id=1044914 ACEPSX_RS09010 WP_068805423.1 1817079..1818881(-) (pepF) [Pediococcus parvulus strain FUA 30084]
MAEIKQLPKRSDVPVELTWDLTTIFKDDRAVKTAMTQLKVGVQAVLTQQGKLQDSAQNLLKVIQDELNVQNQLEHLFVYA
ELKNDQDTGDNTNQGLKDQITGLVAKASAQLAWIEPEILAIPNQKLTEFQNNESELKPYEHFLAVLRLKKDHVLSAKEEA
ILAGASSIFGSSEKVFGILDNSDLKFPFVKNSAGQTVQLSQGMYSTLLQSTNQVVRKQAFEQLYAVYEQFRNTFAATLSG
EVKVHNFNAQIRGFKDARQAAMSENAIPDAVYTNLVTEVNSHLDLLHRYVGLRKKILNLKEMHMYDLYTPITGKSPLSYT
YQKAQTEAKEALQIMGDDYVSHVDEAFKNRWIDVVENQGKRSGAYSSGVYGTNPFMLLNWQDDLDNLFTLVHEMGHSMHT
YYTTHNQPYQYGDYAIFVAEIASTTNENILTSYLLDKYDDPQIKLYVLNHYLDDFKGTVYRQTQFAEFEQFIHEADAKGE
PLTAEMMSNYYGDLNHRYYGDAVINDDQIKSEWTRIPHFYYNFYVYQYATGFAAASSLANGITTHQAHARENYLNYLKSG
SSDFPLNVMKKAGVDMTRKAYLEDAFAVFEKRLNEFESLL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=1044914 ACEPSX_RS09010 WP_068805423.1 1817079..1818881(-) (pepF) [Pediococcus parvulus strain FUA 30084]
ATGGCAGAGATAAAACAGTTACCGAAACGTAGTGATGTGCCAGTTGAGTTAACGTGGGATTTAACCACAATTTTTAAGGA
CGATCGAGCCGTGAAAACGGCAATGACACAATTGAAAGTAGGGGTACAAGCTGTACTAACCCAACAAGGAAAGCTACAAG
ATAGTGCCCAAAATTTACTAAAAGTGATTCAAGACGAACTAAATGTTCAAAACCAATTGGAACATTTATTTGTTTATGCA
GAGTTAAAAAATGATCAAGATACTGGGGACAACACAAATCAGGGCTTAAAAGACCAAATCACGGGACTAGTAGCAAAAGC
TTCTGCTCAATTAGCTTGGATTGAACCTGAAATTTTGGCAATTCCAAATCAAAAACTGACTGAGTTTCAAAATAATGAAT
CAGAGTTAAAACCATATGAACATTTCTTAGCTGTTTTGCGGTTAAAGAAGGATCATGTGTTATCCGCAAAAGAAGAAGCC
ATATTAGCAGGTGCGAGTTCCATTTTTGGTTCCTCTGAAAAAGTGTTTGGAATTTTGGATAATTCGGATTTGAAATTTCC
ATTTGTGAAAAATTCGGCTGGTCAAACGGTACAGCTTTCACAAGGGATGTATTCAACTTTGCTTCAATCAACAAACCAAG
TAGTTCGAAAGCAAGCTTTTGAGCAGTTATACGCTGTCTATGAGCAATTTAGAAATACATTTGCCGCAACCTTATCAGGT
GAAGTTAAGGTGCATAATTTTAATGCACAAATTCGCGGTTTTAAAGATGCCCGGCAGGCTGCCATGAGTGAAAATGCCAT
CCCAGACGCCGTGTATACTAACCTAGTCACTGAAGTGAATTCACATCTAGATTTGTTGCATCGGTATGTTGGTTTGAGAA
AGAAAATTCTTAATTTAAAAGAAATGCATATGTACGATCTGTATACGCCGATTACTGGGAAATCGCCATTAAGCTACACT
TATCAAAAGGCCCAAACTGAAGCTAAAGAAGCTTTGCAGATCATGGGTGATGATTATGTGAGTCATGTTGATGAAGCCTT
CAAAAATCGCTGGATTGATGTAGTTGAAAATCAAGGAAAGCGCAGCGGGGCATATTCTTCAGGTGTCTATGGTACAAATC
CGTTCATGTTGTTAAATTGGCAAGATGATTTAGACAATTTGTTTACTTTGGTTCATGAAATGGGTCATAGTATGCATACG
TATTACACTACCCACAATCAGCCTTATCAATATGGCGATTATGCAATTTTTGTGGCTGAGATAGCCTCCACTACAAACGA
GAACATTTTGACATCATATTTATTGGATAAGTATGATGATCCACAAATTAAACTCTATGTTTTGAACCATTATTTAGATG
ACTTCAAGGGGACTGTTTATCGTCAGACTCAATTTGCTGAGTTTGAACAATTTATTCATGAAGCGGATGCAAAGGGAGAG
CCATTAACGGCCGAAATGATGTCAAATTACTATGGTGATCTAAATCATCGTTATTATGGGGATGCAGTGATTAACGATGA
TCAAATTAAATCTGAATGGACACGAATCCCGCATTTTTATTATAATTTTTATGTTTATCAGTATGCAACAGGGTTTGCAG
CGGCTTCCTCACTGGCAAACGGGATCACAACACATCAGGCTCATGCGCGGGAAAATTATTTAAACTATTTAAAATCTGGT
AGTTCTGATTTTCCACTGAATGTTATGAAAAAAGCTGGCGTAGATATGACTCGAAAGGCCTATTTAGAAGACGCCTTTGC
GGTTTTTGAGAAGCGTTTAAACGAGTTTGAAAGTTTGTTATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(207-587)

Oligopeptidase F (Peptidase_M3_N)

(117-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.761

98.5

0.5

Multiple sequence alignment