Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | R8901_RS05930 | Genome accession | NZ_AP028342 |
| Coordinates | 1147883..1148842 (+) | Length | 319 a.a. |
| NCBI ID | WP_002935343.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain BCH-10330 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1142883..1153842
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8901_RS05900 (B10330_11720) | neuC | 1143470..1144594 (+) | 1125 | WP_002859249.1 | UDP-N-acetylglucosamine 2-epimerase | - |
| R8901_RS05905 (B10330_11730) | - | 1144587..1145210 (+) | 624 | WP_171822998.1 | glycosyltransferase | - |
| R8901_RS05910 (B10330_11740) | - | 1145203..1145535 (+) | 333 | WP_019260376.1 | hypothetical protein | - |
| R8901_RS05915 (B10330_11750) | - | 1145532..1146197 (+) | 666 | WP_002935341.1 | cytidylyltransferase domain-containing protein | - |
| R8901_RS05920 (B10330_11760) | - | 1146321..1146953 (+) | 633 | WP_032580870.1 | CatB-related O-acetyltransferase | - |
| R8901_RS05925 (B10330_11770) | waaV | 1147012..1147824 (-) | 813 | WP_060809544.1 | glycosyltransferase family 2 protein | - |
| R8901_RS05930 (B10330_11780) | waaF | 1147883..1148842 (+) | 960 | WP_002935343.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| R8901_RS05935 (B10330_11790) | gmhA | 1148823..1149383 (-) | 561 | WP_058001659.1 | D-sedoheptulose 7-phosphate isomerase | - |
| R8901_RS05940 (B10330_11800) | rfaE1 | 1149380..1150765 (-) | 1386 | WP_060809545.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| R8901_RS05945 (B10330_11810) | rfaD | 1150758..1151711 (-) | 954 | WP_002859254.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| R8901_RS05950 (B10330_11820) | gmhB | 1151712..1152273 (-) | 562 | Protein_1147 | D-glycero-alpha-D-manno-heptose-1,7-bisphosphate 7-phosphatase | - |
| R8901_RS05955 (B10330_11830) | - | 1152354..1152656 (+) | 303 | WP_002852762.1 | c-type cytochrome | - |
| R8901_RS05960 (B10330_11840) | ccoS | 1152679..1152885 (-) | 207 | WP_002852798.1 | cbb3-type cytochrome oxidase assembly protein CcoS | - |
Sequence
Protein
Download Length: 319 a.a. Molecular weight: 36740.45 Da Isoelectric Point: 10.3627
>NTDB_id=104491 R8901_RS05930 WP_002935343.1 1147883..1148842(+) (waaF) [Campylobacter jejuni strain BCH-10330]
MKIFIHLPTWLGDAVMASLALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKVEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL
MKIFIHLPTWLGDAVMASLALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKVEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHLSAVYKVKTVAIFGPTKFTQTSPWQNQNAKLVHLDLACMPCMQKICPLKHHKCMKDLKPQRVIEEARNLLKNPHL
Nucleotide
Download Length: 960 bp
>NTDB_id=104491 R8901_RS05930 WP_002935343.1 1147883..1148842(+) (waaF) [Campylobacter jejuni strain BCH-10330]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACTTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGTCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATAACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACTTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCTCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTAGTATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTCAAAACCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTAGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGTGCAGGAAAAGTCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACCATCAAAACCCTTTGTCAAAATATTGCTTTTTGTGATCTTTTCATAACAAATGACAGT
GGTCCTATGCACCTAAGTGCGGTTTATAAGGTAAAAACCGTGGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAACGCAAAATTAGTACACTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAATCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAGCCTCAAAGGGTTATAGAAGAAGCTAGAAATTTACTTAAAAACCCTCATCTATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
94.357 |
100 |
0.944 |