Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   ACEO96_RS09985 Genome accession   NZ_CP168657
Coordinates   2218853..2222215 (-) Length   1120 a.a.
NCBI ID   WP_199867708.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VA1     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 2213853..2227215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEO96_RS09965 (ACEO96_09965) - 2214789..2215217 (+) 429 WP_013856359.1 HIT domain-containing protein -
  ACEO96_RS09970 (ACEO96_09970) - 2215330..2215560 (-) 231 WP_096036573.1 FeoC-like transcriptional regulator -
  ACEO96_RS09975 (ACEO96_09975) feoB 2215557..2217830 (-) 2274 WP_094163674.1 Fe(2+) transporter permease subunit FeoB -
  ACEO96_RS09980 (ACEO96_09980) - 2217830..2218057 (-) 228 WP_013856356.1 FeoA family protein -
  ACEO96_RS09985 (ACEO96_09985) tfoS 2218853..2222215 (-) 3363 WP_199867708.1 AraC family transcriptional regulator Regulator
  ACEO96_RS09990 (ACEO96_09990) znuA 2222388..2223266 (-) 879 WP_017048516.1 zinc ABC transporter substrate-binding protein ZnuA -
  ACEO96_RS09995 (ACEO96_09995) znuC 2223351..2224133 (+) 783 WP_013856354.1 zinc ABC transporter ATP-binding protein ZnuC -
  ACEO96_RS10000 (ACEO96_10000) znuB 2224126..2224905 (+) 780 WP_373433021.1 zinc ABC transporter permease subunit ZnuB -
  ACEO96_RS10005 (ACEO96_10005) sucD 2224983..2225855 (-) 873 WP_013856352.1 succinate--CoA ligase subunit alpha -
  ACEO96_RS10010 (ACEO96_10010) sucC 2225855..2227021 (-) 1167 WP_013856351.1 ADP-forming succinate--CoA ligase subunit beta -

Sequence

Protein


Download         Length: 1120 a.a.        Molecular weight: 127919.80 Da        Isoelectric Point: 7.0008

>NTDB_id=1044831 ACEO96_RS09985 WP_199867708.1 2218853..2222215(-) (tfoS) [Vibrio anguillarum strain VA1]
MKGKNDYFKPLLWILGFLTLLLAQGTQALDKAPSIFYPLPAQAQGKIFAAQNLFLGEEGGIWIHDVHGKVVFFDGQNILP
RRGSVLSQESENITYLNNAFWTFIDNELYRTYPAQDRELVFSLTPGIIIKKIGSSGNFIWLADETHFYTYHAQTHKLVTY
SFKEMYQLNQASRLIVNDAKFVLSKWVLATNAGVYLSDGESFSHVLSSGKNFIEKLYFSEKRRELVIGTLNGGLIIDVED
PKRQQKLVGDSHVLSVAETDQEYWIGTEDGLFVHSFLTGKTVKLESNDQDNNGLPGNKIYSLVNDLQGGIWIATDKGIRY
FSLFGQKFKRHSIAQLNNNPITKIVTRSDNKGYLFLTRQGLYQVDAENWQEPKLIFPGEVHDVAQIDDHSLWIATHTGIV
IYHLQTKKMIETSMLPLKLRSNDTKHLEFDHEGLLWGATGNHLWSYRLADNSLTDFGSVWFVDAFLPAKIIKLKSTRRGV
FIGTDHGVYLFDKGKIVFLRATSHYGQSIDIFESSKGDVWFASAYGVFVLAHDRSDIRSIDMVEENISPKCLTETGNGIW
LTSSQGISLYNPMGEVVKHFGDPHGLMNNEFKSGVCESSIINNQQQLLLGSRFGLVTAWSSELTVATPPNTNIIFSQVNV
DHIPVMFGRGRFQTLELEYGSSISFLFGALPESRALSLEYRIAGDKEWQRLESAQLTLDHLLPGHYRLLVRNYSPNPQNS
MINSLSFIVDNPWYWSSWAIVLYLCLSIGLIAFASWWRSRWVTKVNRKLKAQVALKTDQLRHQSKIVLTNNQQLRKQLQI
RHIVVEQMLDSITPTLNQLIYRSQLHQLARLESLALKVKRELALLRNVRNDKTATQLLYDLSIILNSCVDGWREEFAKAN
ISLAVNNELKQAYIESAHFNLDIIFNTLLSDAVKRLYRNQELQIHCYEREKRLFIVMIDCGDQVQSINSDKRISGFELEE
MQLLVQRSGGEIHIFSSPERNLVELSWPSVELVSDAPEMIVVEEHSEDKFIDVTEKEWLKKVEKLVHNHYSDPEFSTSSA
AKSLFVSERSLQRRFKAITNKTFKEYLNEIRLEKACQYLLAGGKVAQVAFDCGFNDPSYFSQRFKHHFGLSPTQFVDDNE

Nucleotide


Download         Length: 3363 bp        

>NTDB_id=1044831 ACEO96_RS09985 WP_199867708.1 2218853..2222215(-) (tfoS) [Vibrio anguillarum strain VA1]
TTGAAAGGAAAGAACGACTATTTTAAACCTTTGCTCTGGATCTTGGGTTTTCTGACGCTTTTATTAGCGCAGGGGACACA
AGCTCTAGACAAAGCACCTTCCATCTTCTATCCATTGCCAGCTCAGGCTCAAGGGAAAATTTTTGCCGCACAAAATTTGT
TTCTAGGTGAAGAAGGGGGAATTTGGATACACGATGTGCATGGCAAAGTGGTTTTCTTTGATGGGCAAAACATCCTTCCC
CGGCGTGGCTCAGTGCTTTCACAAGAGAGCGAAAATATTACCTATCTTAATAACGCTTTTTGGACGTTCATTGATAATGA
ACTTTATCGAACTTATCCCGCACAAGATCGCGAATTAGTATTTAGCTTAACGCCTGGAATCATCATAAAAAAAATAGGTT
CGTCAGGTAATTTCATCTGGTTAGCCGATGAGACGCACTTTTATACATACCATGCGCAAACCCACAAGTTAGTTACTTAT
TCTTTTAAAGAAATGTATCAATTAAATCAAGCTAGTCGATTGATCGTTAATGATGCGAAGTTTGTGCTTTCTAAATGGGT
ATTAGCCACTAATGCTGGAGTCTATCTGTCAGATGGAGAGAGTTTTTCTCACGTGCTCAGCTCTGGTAAAAACTTCATTG
AGAAACTCTATTTTTCCGAGAAACGTAGAGAACTTGTGATTGGAACGCTCAATGGTGGGCTGATTATTGATGTCGAGGAC
CCAAAGCGCCAACAAAAGTTGGTTGGAGATTCCCATGTATTATCTGTTGCTGAGACAGATCAAGAGTATTGGATTGGTAC
TGAAGATGGATTATTTGTTCATTCGTTTTTGACAGGTAAAACCGTCAAGTTAGAAAGTAATGACCAAGACAATAATGGGT
TACCAGGCAATAAAATTTATTCATTGGTCAATGACTTACAGGGTGGGATTTGGATCGCAACGGATAAAGGTATTCGTTAC
TTTTCTCTGTTTGGACAAAAATTTAAGCGCCATTCCATTGCACAGCTCAACAATAATCCCATAACAAAAATTGTGACAAG
GTCAGATAATAAAGGGTATTTGTTTTTAACTCGACAAGGGTTATACCAAGTCGATGCTGAAAATTGGCAAGAGCCTAAAC
TTATTTTCCCAGGAGAAGTGCATGATGTCGCTCAAATAGATGATCATTCTCTATGGATAGCTACACATACAGGCATTGTT
ATTTATCACTTGCAGACAAAAAAGATGATAGAAACGAGCATGTTACCTCTTAAGCTGCGTTCGAATGATACTAAACACCT
TGAATTTGATCATGAAGGACTATTATGGGGAGCAACAGGTAACCATTTGTGGTCATATCGGTTGGCCGATAACTCGCTCA
CCGATTTCGGTTCGGTATGGTTTGTTGATGCATTTTTGCCTGCAAAAATAATAAAACTTAAGTCAACTCGGCGAGGGGTA
TTTATCGGCACTGACCATGGTGTTTATCTTTTTGACAAAGGCAAAATTGTTTTTCTCCGAGCGACTAGTCATTATGGACA
AAGCATTGATATATTTGAGAGTAGCAAGGGTGATGTTTGGTTTGCTAGTGCTTATGGCGTCTTTGTTTTGGCACATGATC
GTAGTGATATTCGATCTATTGATATGGTTGAAGAGAATATTAGCCCCAAATGTTTAACTGAAACGGGCAACGGTATTTGG
CTGACTTCCTCACAAGGAATCTCGCTCTACAATCCTATGGGTGAGGTGGTAAAGCATTTTGGTGATCCACACGGATTGAT
GAATAATGAATTTAAAAGTGGAGTTTGCGAATCAAGTATTATCAATAACCAACAGCAGTTGCTGCTAGGTTCCCGTTTCG
GCTTAGTGACAGCATGGTCCTCTGAACTCACGGTTGCTACCCCTCCTAATACCAATATTATCTTTAGCCAAGTGAATGTC
GATCACATTCCTGTCATGTTCGGTCGTGGTCGTTTTCAGACACTAGAATTGGAATATGGAAGTTCGATAAGCTTTTTATT
TGGTGCATTGCCAGAATCGAGAGCCTTATCATTGGAGTATCGTATTGCAGGGGATAAGGAGTGGCAGAGATTAGAAAGCG
CTCAGTTGACACTTGATCACCTGTTACCTGGACACTATCGTTTGCTGGTGAGAAATTACAGTCCAAATCCGCAAAACAGT
ATGATAAACAGTCTATCATTTATTGTGGATAACCCGTGGTATTGGTCTTCATGGGCTATTGTTCTTTACCTTTGCCTTTC
TATAGGCCTTATTGCTTTTGCTTCATGGTGGCGTTCTCGTTGGGTTACCAAAGTAAACCGAAAGTTAAAAGCTCAGGTGG
CCTTGAAAACGGATCAACTACGGCATCAAAGCAAAATTGTTTTGACTAATAACCAGCAGTTGCGCAAGCAATTACAAATT
CGCCATATCGTTGTTGAACAGATGTTAGATTCTATTACACCTACATTAAATCAGCTGATTTATCGCTCCCAACTACATCA
ACTCGCGCGACTTGAGTCTTTAGCTTTAAAAGTAAAACGTGAACTGGCGTTACTTCGTAATGTAAGAAATGATAAAACAG
CGACTCAGTTGCTCTACGACCTATCGATCATCTTGAACTCTTGTGTGGACGGATGGCGTGAAGAGTTCGCGAAAGCGAAT
ATTTCGTTGGCGGTGAACAATGAGCTTAAACAAGCTTATATTGAATCTGCCCATTTTAACCTAGACATCATTTTCAATAC
GCTACTGTCTGATGCGGTAAAACGTCTTTACAGAAATCAAGAGCTACAAATTCATTGTTATGAAAGGGAGAAAAGACTGT
TTATTGTGATGATTGACTGTGGCGATCAGGTGCAGTCTATCAATAGTGATAAGCGTATCTCTGGTTTTGAACTAGAGGAA
ATGCAACTGTTAGTACAGCGCAGTGGTGGGGAAATACATATTTTTTCATCGCCAGAACGAAATTTAGTTGAGCTTTCTTG
GCCATCAGTTGAGCTTGTGAGTGATGCACCTGAAATGATCGTCGTAGAGGAGCATTCAGAGGACAAGTTTATTGATGTAA
CGGAAAAAGAGTGGCTTAAAAAAGTCGAAAAATTGGTACACAATCACTATTCAGATCCTGAATTTAGTACCTCTAGTGCG
GCCAAATCACTCTTCGTATCGGAGCGTAGTTTGCAGCGTCGTTTTAAAGCGATCACCAATAAAACATTCAAAGAGTATCT
AAATGAGATCCGCTTAGAGAAAGCGTGCCAATATTTGCTCGCAGGAGGAAAAGTCGCCCAAGTCGCTTTTGATTGTGGGT
TTAATGATCCGTCTTATTTCAGCCAAAGATTTAAACATCACTTCGGTTTATCGCCAACCCAATTTGTTGATGATAACGAG
TAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1041-1116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

49.068

100

0.494

Multiple sequence alignment