Detailed information NTG1044827

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: ACEO96_RS08395
• Genome accession: NZ_CP168657
• Coordinates: 1860997..1862421 (+)
• Length: 474 a.a.
• NCBI ID: WP_017047014.1
• Uniprot ID: -
• Organism: Vibrio anguillarum strain VA1
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1855997..1867421

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACEO96_RS08380 (ACEO96_08380)	-	1856399..1858357 (-)	1959	WP_013856634.1	methyl-accepting chemotaxis protein	-
ACEO96_RS08385 (ACEO96_08385)	-	1858574..1859257 (+)	684	WP_373432960.1	NAD(P)H-binding protein	-
ACEO96_RS08390 (ACEO96_08390)	-	1859478..1860845 (+)	1368	WP_026028454.1	L-cystine transporter	-
ACEO96_RS08395 (ACEO96_08395)	sbcB	1860997..1862421 (+)	1425	WP_017047014.1	exodeoxyribonuclease I	Machinery gene
ACEO96_RS08400 (ACEO96_08400)	-	1862546..1862878 (+)	333	WP_373433366.1	CidA/LrgA family protein	-
ACEO96_RS08405 (ACEO96_08405)	-	1862878..1863558 (+)	681	WP_010319624.1	CidB/LrgB family autolysis modulator	-
ACEO96_RS08410 (ACEO96_08410)	cdd	1863767..1864654 (+)	888	WP_047688268.1	cytidine deaminase	-

Sequence

Protein

• Length: 474 a.a.
• Molecular weight: 54619.09 Da
• Isoelectric Point: 5.4372

>NTDB_id=1044827 ACEO96_RS08395 WP_017047014.1 1860997..1862421(+) (sbcB) [Vibrio anguillarum strain VA1]
MRQEHPPTFFFLDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQPPADYLPSPEAALITGITPQKAVAQGLPEP
EFIAKIHQQLATPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGINWPENDEGFT
SFKLEHLSVANGIEHANAHDAMADVIATIELAKKVKAAQPKLFDYFFNMRHKRKLNDLIDIVNMTPLMHVSGMLGRECQY
TSWIVPIAWHPTNQNAVIVVDLAKNPQPLIDLSSEELHQRLYTKREELAEDELPVPIKLVHLNKCPILAPAKTLTAENAD
HIGVDRNLCLEHLALIKQYPEIREKLIGLYTIEREYKHSDDVDTQLYDGFFSPADKAAMEIIRQADPVNLAALDISFSDK
RIEPLLFRYRARHYPLTLSDEEQRRWATHCRDYFESHLEEYMLNLENLVHTHSSDEKKMAILKSVYRYVEDIAS

Nucleotide

• Length: 1425 bp

>NTDB_id=1044827 ACEO96_RS08395 WP_017047014.1 1860997..1862421(+) (sbcB) [Vibrio anguillarum strain VA1]
ATGCGACAAGAGCACCCGCCTACTTTCTTTTTCCTCGACTATGAGACGTGGGGAGTCAACCCTGCGAAAGATCGTCCGAG
CCAATTTGCGGGCGTTCGCACCGATATGGATTTTAATATTATTGGTGAACCACTGGTTATCTATTGCCAACCACCAGCGG
ACTATCTGCCTTCTCCAGAAGCGGCGCTTATTACGGGTATCACACCACAAAAAGCGGTAGCCCAAGGCTTGCCAGAGCCT
GAATTTATCGCCAAAATTCATCAACAACTCGCCACACCCAACACCACCAGCCTTGGTTACAACAGTATTCGTTTTGATGA
TGAAGTAACGCGTTATACTTGCTATCGTAATTTCATTGATCCGTATGCTTGGAGCTGGCAAAACGGCAATTCACGCTGGG
ATTTACTTGATGTGATGCGCGCCTGCCATGCGCTACGCCCAGAAGGCATCAACTGGCCCGAAAATGACGAAGGCTTTACC
AGTTTTAAGTTGGAGCATCTCTCAGTTGCCAATGGCATCGAACATGCGAATGCCCACGATGCTATGGCTGATGTTATCGC
CACCATTGAGCTGGCCAAAAAAGTAAAAGCCGCCCAACCCAAGTTGTTTGATTACTTTTTTAACATGCGCCATAAACGCA
AACTCAATGATCTGATTGATATCGTCAACATGACACCTTTAATGCACGTATCGGGTATGTTAGGCCGAGAATGCCAATAC
ACCAGTTGGATCGTGCCGATTGCTTGGCATCCCACCAATCAAAATGCGGTTATTGTGGTGGACCTTGCCAAAAACCCTCA
ACCCCTGATCGATTTAAGCAGCGAAGAACTGCATCAACGTCTATATACCAAACGCGAAGAGTTGGCAGAAGATGAATTGC
CAGTGCCCATCAAATTAGTGCATCTCAATAAATGCCCTATCCTTGCGCCGGCCAAAACATTAACGGCCGAAAATGCAGAC
CATATCGGGGTCGATAGAAACCTGTGCCTTGAACACTTAGCGCTCATCAAGCAGTACCCTGAGATCAGAGAAAAGCTGAT
TGGCCTCTACACAATTGAGCGCGAATATAAGCACAGTGACGATGTCGATACTCAACTCTACGACGGTTTCTTCTCTCCAG
CCGACAAAGCGGCGATGGAGATCATTCGCCAAGCTGACCCTGTCAACCTCGCCGCATTAGACATTAGTTTTAGCGATAAG
CGCATCGAACCCTTGCTGTTTCGCTACCGCGCTCGCCATTACCCATTGACATTAAGTGACGAAGAGCAAAGACGTTGGGC
AACTCACTGTCGTGATTATTTCGAAAGCCACCTTGAAGAGTACATGCTCAATTTAGAGAACTTAGTTCACACCCACAGCA
GTGACGAAAAGAAAATGGCTATTTTAAAATCCGTTTACCGTTATGTGGAAGACATCGCGAGTTAA

Domains

Predicted by InterproScan.

• Exonuclease (RNase_T) (11-191)

• Exonuclease C-terminal (Exonuc_X-T_C) (210-470)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	81.395	99.789	0.812