Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACEO96_RS02760 Genome accession   NZ_CP168657
Coordinates   563511..564512 (+) Length   333 a.a.
NCBI ID   WP_017047531.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VA1     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 558511..569512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEO96_RS02730 (ACEO96_02730) ispD 558652..559383 (+) 732 WP_010320457.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACEO96_RS02735 (ACEO96_02735) ispF 559376..559861 (+) 486 WP_013857718.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACEO96_RS02740 (ACEO96_02740) truD 560072..561115 (+) 1044 WP_164996749.1 tRNA pseudouridine(13) synthase TruD -
  ACEO96_RS02745 (ACEO96_02745) surE 561128..561874 (+) 747 WP_010320454.1 5'/3'-nucleotidase SurE -
  ACEO96_RS02750 (ACEO96_02750) - 561874..562500 (+) 627 WP_013857716.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  ACEO96_RS02755 (ACEO96_02755) nlpD 562506..563438 (+) 933 WP_373433354.1 murein hydrolase activator NlpD -
  ACEO96_RS02760 (ACEO96_02760) rpoS 563511..564512 (+) 1002 WP_017047531.1 RNA polymerase sigma factor RpoS Regulator
  ACEO96_RS02765 (ACEO96_02765) mutS 564652..567240 (-) 2589 WP_170899394.1 DNA mismatch repair protein MutS -
  ACEO96_RS02770 (ACEO96_02770) cysM 567484..568374 (-) 891 WP_026027976.1 cysteine synthase CysM -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 38272.18 Da        Isoelectric Point: 4.4454

>NTDB_id=1044810 ACEO96_RS02760 WP_017047531.1 563511..564512(+) (rpoS) [Vibrio anguillarum strain VA1]
MSISNAVTKVEEFEDQEIMDSIEVDEELTTTKSQSDDDVQIEDAKEGFDASTKSLDATQMYLSEIGFSPLLTAQEEVLYA
RRSLRGDEAARKRMIESNLRLVVKISRRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMN
QTRTIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAFQLDKPVEDVSKMLRLNERISSVDTPIGGDGDKALLDIIPD
ANNSDPEISTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVKQ
GLNMEALFNVEYD

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=1044810 ACEO96_RS02760 WP_017047531.1 563511..564512(+) (rpoS) [Vibrio anguillarum strain VA1]
ATGAGTATCAGCAATGCAGTAACGAAAGTCGAAGAGTTTGAAGACCAAGAGATCATGGATTCGATTGAGGTTGATGAAGA
ACTCACCACCACTAAAAGCCAAAGCGATGACGATGTTCAAATCGAAGATGCCAAAGAAGGGTTTGATGCGTCAACAAAAA
GCTTAGATGCAACACAGATGTATCTTAGCGAGATTGGTTTTTCTCCATTATTAACAGCTCAAGAAGAAGTACTTTATGCT
CGTCGTTCACTGAGAGGCGATGAAGCTGCTCGTAAACGCATGATCGAAAGTAACTTACGTTTGGTCGTTAAAATTTCTCG
CCGTTATGGTAATCGTGGCTTAGCTTTACTCGATCTAATTGAAGAAGGTAATTTAGGCTTGATCCGTGCGGTAGAAAAAT
TTGATCCAGAACGTGGCTTTAGATTCTCAACCTATGCTACTTGGTGGATCCGTCAAACCATTGAACGTGCATTAATGAAC
CAAACGCGCACTATCCGTTTGCCAATTCACGTCGTTAAAGAGTTGAATATCTACCTTCGTACGGCTCGCGAGCTATCGCA
GAAGTTAGATCATGAACCTACCGCAGAAGAAATTGCGTTCCAACTGGATAAGCCAGTAGAAGATGTCAGTAAAATGCTGC
GTCTTAACGAGCGTATCAGTTCTGTTGATACACCGATTGGCGGCGATGGTGACAAAGCACTACTCGATATCATCCCAGAT
GCGAACAACTCTGATCCTGAAATTTCTACGCAAGATGATGATATCCGTGAATCACTACTGAATTGGTTAGATGAACTAAA
CCCAAAACAAAAAGAGGTACTTGCACGCCGTTTTGGACTATTAGGTTATGAACCGTCCACCTTAGAAGAGGTAGGGCGCG
AAATTAACTTAACTCGTGAACGAGTTCGTCAAATTCAAGTGGAAGGCCTACGTCGTTTGAGAGAGATCTTGGTTAAACAA
GGCTTGAACATGGAAGCGCTGTTTAATGTTGAATACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(174-247)

Sigma-70, region 4 (Sigma70_r4)

(262-315)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)

Sigma-70 region 2 (Sigma70_r2)

(94-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

86.826

100

0.871

Multiple sequence alignment