Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   ACCB35_RS15315 Genome accession   NZ_CP168654
Coordinates   3014268..3016661 (-) Length   797 a.a.
NCBI ID   WP_374054370.1    Uniprot ID   -
Organism   Rossellomorea sp. FM04394     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3009268..3021661
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCB35_RS15290 - 3010521..3011597 (-) 1077 WP_374054366.1 AI-2E family transporter -
  ACCB35_RS15295 - 3011936..3012067 (-) 132 WP_374054367.1 YrzQ family protein -
  ACCB35_RS15300 - 3012083..3012268 (-) 186 WP_034757353.1 hypothetical protein -
  ACCB35_RS15305 bioB 3012455..3013462 (-) 1008 WP_374054368.1 biotin synthase BioB -
  ACCB35_RS15310 - 3013484..3014080 (-) 597 WP_374054369.1 biotin transporter BioY -
  ACCB35_RS15315 recD2 3014268..3016661 (-) 2394 WP_374054370.1 ATP-dependent RecD-like DNA helicase Machinery gene
  ACCB35_RS15320 - 3016679..3017350 (-) 672 WP_374054371.1 tetratricopeptide repeat protein -
  ACCB35_RS15325 mnmA 3017523..3018638 (-) 1116 WP_374054372.1 tRNA 2-thiouridine(34) synthase MnmA -
  ACCB35_RS15330 - 3018687..3019829 (-) 1143 WP_374054373.1 cysteine desulfurase family protein -
  ACCB35_RS15335 cymR 3019843..3020262 (-) 420 WP_044339554.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 89900.53 Da        Isoelectric Point: 4.7920

>NTDB_id=1044781 ACCB35_RS15315 WP_374054370.1 3014268..3016661(-) (recD2) [Rossellomorea sp. FM04394]
MSQQDSLKLFGDEEIYIKGRHLVTIFHNEENLYTVVRIRVDETNDSYEDKEAVVTGHFPKIHEDETYVFYGRFQEHPKFG
MQFHAKHFKKEIPQSTQGVVHYLSSDLFKGIGKKTAEKIVEHIGENAITKILENPSLLDEIPKLPKEKAKSIYDTLSEHQ
GLERVMIMLNDLGFGPQISMKVYQAYKEQALEIIQNNPYKLVEDIEGIGFTRADEIGSKIGLTGSHPDRIKAGCLYTLEQ
TCVKQGHVYLEAEELIVTVKELLEKSQPEKVDYTEISSQLVSLEEEGKVIGEGTKVYVPSLYFSEKGIVTNIEKILSQTQ
YKDQFPQSEFLLSLGALEDRLGVQYAPSQKEAIETALMSPMLLLTGGPGTGKTTVIQGIVELFADLHGCSLDPKDYKDEP
FPVLLTAPTGRAAKRMTESTGLPAMTIHRLLGWNGQEGFKSDEERAIEGKLLIVDEVSMVDTWLAHQLLKALPDDIQVIL
VGDEDQLPSVGPGQVLKDLLKSEVVPTVRLTDIYRQEEGSSIIELAHYMKRGQVPADLTRQQKDRSFFPCRTNQISEVVQ
KVVENAKKKGYSPKDIQVLAPMYRGPAGIDRLNELLQEIFNSNDGTRKEIAFGDVKYRIGDKVLQLVNQPENNVFNGDIG
EVVSIFYAKENTEKQDMIIVSYEGNEVTYTRQDLMQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITRS
KQFLILCGELDAFTLGVEREDDFLRKTTLSEKLRNLTAAEADVISSSDEDLPIEELLLNEDPMIGMDGISPYDFMNA

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=1044781 ACCB35_RS15315 WP_374054370.1 3014268..3016661(-) (recD2) [Rossellomorea sp. FM04394]
TTGAGCCAGCAAGACTCTTTAAAGTTGTTTGGTGATGAAGAAATCTATATAAAAGGAAGGCATCTCGTTACGATTTTTCA
TAATGAGGAAAATCTTTATACGGTGGTCCGGATCCGGGTGGACGAAACGAATGATTCTTATGAAGACAAGGAAGCGGTCG
TAACGGGGCACTTCCCTAAAATCCATGAAGATGAGACGTATGTGTTTTACGGGCGGTTTCAGGAACATCCCAAATTTGGC
ATGCAATTTCATGCCAAACACTTCAAGAAAGAAATCCCTCAATCCACACAAGGTGTCGTCCATTATTTATCAAGTGATTT
ATTTAAAGGAATCGGGAAGAAAACAGCTGAGAAGATAGTGGAGCATATCGGGGAAAACGCCATAACCAAAATACTCGAAA
ATCCAAGCCTGCTGGATGAAATTCCAAAGCTTCCAAAGGAAAAGGCGAAAAGTATTTATGATACGCTTTCCGAGCATCAA
GGCTTGGAGCGGGTCATGATCATGCTGAATGACCTGGGATTTGGACCCCAAATTTCCATGAAGGTCTATCAAGCCTATAA
AGAGCAGGCACTTGAAATCATTCAAAATAATCCTTATAAGCTTGTGGAAGATATTGAAGGAATCGGCTTTACCCGGGCCG
ATGAGATTGGTTCTAAGATCGGGTTGACAGGCAGTCATCCCGACCGGATCAAAGCAGGCTGTTTATACACCCTTGAGCAA
ACATGTGTGAAGCAGGGCCATGTGTATCTCGAAGCAGAAGAACTCATTGTTACGGTGAAGGAGCTGCTTGAGAAAAGTCA
GCCCGAAAAGGTCGATTACACTGAAATATCCAGTCAACTGGTTTCCTTGGAGGAAGAGGGTAAAGTCATTGGAGAAGGCA
CAAAGGTATATGTTCCTTCTCTTTACTTCTCGGAAAAAGGAATCGTGACAAACATTGAAAAGATTTTGTCTCAAACCCAA
TATAAAGATCAATTTCCTCAATCCGAATTTCTTCTATCACTTGGAGCACTGGAGGACCGACTGGGAGTTCAATACGCACC
TTCACAAAAAGAAGCCATCGAAACAGCGTTGATGTCCCCCATGCTTCTGTTAACCGGAGGACCCGGAACCGGTAAGACGA
CCGTCATTCAGGGGATTGTGGAGCTGTTTGCGGATCTCCATGGCTGCTCCTTGGATCCCAAGGATTACAAGGATGAACCC
TTTCCTGTCTTACTGACAGCCCCGACTGGTCGAGCGGCAAAGCGCATGACAGAATCCACGGGCCTCCCTGCCATGACGAT
TCACCGACTTTTAGGCTGGAACGGTCAAGAAGGATTTAAGAGTGATGAAGAACGGGCGATAGAAGGCAAGCTGCTGATTG
TGGATGAGGTGTCCATGGTTGATACCTGGCTCGCCCATCAACTTTTGAAAGCTTTACCGGATGATATCCAGGTGATCCTT
GTCGGGGATGAAGATCAATTGCCATCTGTCGGACCTGGACAGGTACTAAAGGACCTTCTGAAATCGGAAGTGGTGCCGAC
GGTAAGGTTAACGGATATCTATAGACAAGAAGAGGGGTCCTCTATTATTGAACTTGCCCACTATATGAAAAGGGGGCAAG
TCCCGGCTGATTTAACCCGTCAGCAAAAGGATCGGTCCTTCTTTCCCTGCAGGACCAATCAGATATCGGAAGTCGTTCAA
AAAGTCGTTGAGAACGCGAAGAAAAAAGGGTACTCCCCAAAAGATATACAGGTACTTGCTCCTATGTACCGGGGCCCTGC
CGGTATTGATCGATTAAATGAACTCCTTCAGGAGATCTTTAATAGCAATGACGGGACCCGAAAAGAAATCGCGTTCGGAG
ATGTGAAATATCGCATTGGAGATAAAGTGCTGCAGCTTGTCAATCAGCCTGAAAACAATGTCTTCAATGGAGATATCGGT
GAAGTCGTCTCGATTTTCTATGCAAAGGAAAACACAGAGAAGCAGGATATGATCATTGTTTCTTACGAAGGCAACGAGGT
CACCTACACACGACAGGATCTCATGCAAATTACCCATGCGTATTGCTGCTCGATCCATAAGTCACAAGGAAGCGAGTTTC
CCATCGTGATTTTACCTGTGGTGAAAAGCTATTATCGCATGCTGCGAAGAAATCTCTTATACACTGCCATCACAAGAAGC
AAGCAGTTCCTTATTCTTTGTGGAGAGCTGGACGCATTTACTCTTGGAGTTGAAAGAGAAGATGATTTTCTCCGTAAAAC
GACCCTAAGCGAAAAACTTAGAAATTTAACGGCTGCTGAAGCCGACGTAATCTCTTCTTCTGATGAGGATTTACCCATTG
AAGAACTCTTGCTAAATGAAGATCCCATGATAGGAATGGATGGCATCAGCCCCTATGATTTTATGAATGCATAA

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-660)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-249)

AAA domain (AAA_30)

(345-545)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.635

99.749

0.615

Multiple sequence alignment