Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ACCB35_RS14620 Genome accession   NZ_CP168654
Coordinates   2883397..2884437 (-) Length   346 a.a.
NCBI ID   WP_044340151.1    Uniprot ID   -
Organism   Rossellomorea sp. FM04394     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2878397..2889437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCB35_RS14575 - 2878837..2879628 (+) 792 WP_374054286.1 YqhG family protein -
  ACCB35_RS14580 - 2879712..2879891 (-) 180 WP_044340022.1 YqzE family protein -
  ACCB35_RS14585 - 2879940..2880449 (-) 510 WP_374054287.1 shikimate kinase -
  ACCB35_RS14590 - 2880453..2880692 (-) 240 WP_374054288.1 hypothetical protein -
  ACCB35_RS14595 comGF 2880802..2881305 (-) 504 WP_374054289.1 competence type IV pilus minor pilin ComGF -
  ACCB35_RS14600 - 2881232..2881558 (-) 327 WP_374054290.1 hypothetical protein -
  ACCB35_RS14605 comGD 2881542..2881982 (-) 441 WP_374054291.1 competence type IV pilus minor pilin ComGD -
  ACCB35_RS14610 comGC 2881982..2882287 (-) 306 WP_044340016.1 competence type IV pilus major pilin ComGC -
  ACCB35_RS14615 comGB 2882391..2883413 (-) 1023 WP_374054292.1 competence type IV pilus assembly protein ComGB -
  ACCB35_RS14620 comGA 2883397..2884437 (-) 1041 WP_044340151.1 competence type IV pilus ATPase ComGA Machinery gene
  ACCB35_RS14630 - 2885029..2885409 (-) 381 WP_374054293.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  ACCB35_RS14635 - 2885629..2886327 (+) 699 WP_374054294.1 helix-turn-helix transcriptional regulator -
  ACCB35_RS14640 - 2886409..2886654 (+) 246 WP_032087678.1 DUF2626 domain-containing protein -
  ACCB35_RS14645 - 2886701..2887336 (-) 636 WP_374054295.1 MBL fold metallo-hydrolase -
  ACCB35_RS14650 - 2887542..2887715 (+) 174 WP_044339668.1 DUF2759 domain-containing protein -
  ACCB35_RS14655 - 2887957..2888310 (+) 354 WP_044339667.1 helix-turn-helix domain-containing protein -
  ACCB35_RS14660 - 2888365..2888679 (-) 315 WP_044339666.1 MTH1187 family thiamine-binding protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 38705.23 Da        Isoelectric Point: 9.6407

>NTDB_id=1044778 ACCB35_RS14620 WP_044340151.1 2883397..2884437(-) (comGA) [Rossellomorea sp. FM04394]
MIGKAFSSEATDVHLIPRTKDYLIQFRKLGALVPFQTIDPDQAERLIAHLKFMASMDIGEKRKPQSGSFSLTVRNTPLSL
RISTLPTTHLKESLVIRILPQKYQIPIEKMSLYPASAKKLLALLMYSHGLILFTGPTGSGKTTTLYSLVHHCSAALNRNV
ITLEDPVEKMQEDMVQIQVNEKAGITYSTGLKAILRHDPDIIMVGEIRDRETAEIAIRASLTGHLVISTMHTRDAKGAIY
RLMELGIEWHDIEQTLLAVSAQRLLKLVCAVCKGECGGKCHRGKNLNMASVYEIVTGSALKEVLKEAKGEKARHQYHTLQ
TLINKGVALGFVSELEYRKWVHEEKR

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=1044778 ACCB35_RS14620 WP_044340151.1 2883397..2884437(-) (comGA) [Rossellomorea sp. FM04394]
ATGATTGGAAAAGCTTTCAGCAGTGAAGCAACAGATGTTCATTTAATACCCAGAACCAAAGATTACTTGATACAATTCAG
GAAACTTGGAGCATTGGTTCCATTCCAGACCATCGACCCTGATCAGGCAGAACGATTAATTGCCCATTTAAAATTCATGG
CCTCCATGGACATTGGCGAAAAACGAAAACCTCAAAGTGGATCCTTCAGCCTTACCGTCCGAAACACACCCCTATCTCTC
AGAATTTCTACCTTACCAACGACTCATCTAAAAGAAAGTCTCGTCATTCGAATACTCCCTCAAAAATATCAAATACCAAT
CGAAAAGATGTCACTCTATCCTGCCTCTGCAAAAAAGTTACTTGCCCTCCTGATGTATTCTCATGGTCTCATTTTGTTCA
CAGGACCGACAGGCAGTGGCAAAACAACGACTTTGTATTCCCTTGTTCACCATTGTTCGGCAGCCTTGAACCGTAATGTG
ATCACACTGGAAGATCCCGTGGAGAAGATGCAGGAGGATATGGTGCAGATACAAGTGAATGAAAAAGCGGGGATAACATA
TTCCACCGGCTTGAAAGCGATTTTGCGGCACGACCCGGATATCATCATGGTGGGGGAGATCCGAGATCGGGAAACGGCGG
AGATTGCAATAAGGGCAAGCTTAACGGGTCATTTGGTAATTTCTACAATGCATACGAGAGATGCAAAAGGGGCGATCTAT
CGTTTAATGGAATTAGGAATTGAGTGGCATGACATTGAACAGACACTGCTGGCAGTTTCAGCTCAGAGATTACTAAAGTT
AGTATGTGCGGTATGCAAAGGAGAGTGTGGTGGGAAATGCCATCGAGGTAAAAATCTGAACATGGCATCCGTATATGAAA
TTGTGACTGGAAGTGCTTTGAAGGAGGTGCTGAAAGAGGCGAAAGGTGAAAAAGCACGGCATCAGTATCACACACTCCAA
ACTCTAATCAATAAGGGGGTGGCACTAGGATTTGTTTCAGAACTTGAATATAGGAAATGGGTTCATGAAGAAAAACGATG
A

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(2-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

53.89

100

0.54

Multiple sequence alignment