Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   ACCB35_RS07660 Genome accession   NZ_CP168654
Coordinates   1527881..1528849 (+) Length   322 a.a.
NCBI ID   WP_374056417.1    Uniprot ID   -
Organism   Rossellomorea sp. FM04394     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1522881..1533849
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCB35_RS07640 clpB 1523207..1525807 (+) 2601 WP_374056414.1 ATP-dependent chaperone ClpB -
  ACCB35_RS07645 - 1525836..1526018 (-) 183 WP_044337701.1 DUF2929 family protein -
  ACCB35_RS07650 - 1526288..1527031 (+) 744 WP_374056415.1 hydrolase -
  ACCB35_RS07655 - 1527015..1527767 (+) 753 WP_374056416.1 hypothetical protein -
  ACCB35_RS07660 med 1527881..1528849 (+) 969 WP_374056417.1 BMP family ABC transporter substrate-binding protein Regulator
  ACCB35_RS07665 comZ 1528846..1529034 (+) 189 WP_044337697.1 ComZ family protein Regulator
  ACCB35_RS07670 - 1529081..1529296 (-) 216 WP_374056418.1 hypothetical protein -
  ACCB35_RS07675 - 1529502..1530434 (+) 933 WP_044337695.1 beta-ketoacyl-ACP synthase III -
  ACCB35_RS07680 fabF 1530479..1531720 (+) 1242 WP_374056419.1 beta-ketoacyl-ACP synthase II -
  ACCB35_RS07685 - 1531821..1532591 (+) 771 WP_374056420.1 DUF2268 domain-containing protein -
  ACCB35_RS07690 - 1533032..1533781 (+) 750 WP_044337692.1 YjbA family protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35644.02 Da        Isoelectric Point: 4.5637

>NTDB_id=1044764 ACCB35_RS07660 WP_374056417.1 1527881..1528849(+) (med) [Rossellomorea sp. FM04394]
MSKRFYTIFLIVFLIGISGCSPGKSAEIEKVGLLVPETVDDGVWGTKGYKGLLKIQSDYNADVFYKESIKNDTSIKQAVK
AYNDDKVTLVFGHGSEYSGIFNTLSSEYPNMHFVSFNGNATEENTTSLQFKGYAMGFFGGMTAAFQSKTNKIGVIAAFDW
QPEVQGFIDGAKFQKSESELIVEYTNHWDDQTIAFEKLEGLMNQGVDVVYPAGDGYNVSVIEKLKEKGLYAIGYVSDQSD
LGESTVLTSTVQHADKLYSVVAERFANDELDSGNLEFDFEDGVISMGKYSPVIPKEFQAEMKQHVKAYIETGKLPNGKES
KQ

Nucleotide


Download         Length: 969 bp        

>NTDB_id=1044764 ACCB35_RS07660 WP_374056417.1 1527881..1528849(+) (med) [Rossellomorea sp. FM04394]
ATGAGTAAGAGATTTTATACCATTTTCTTGATTGTATTCCTCATTGGAATAAGTGGTTGTTCACCAGGAAAAAGCGCTGA
AATAGAAAAAGTCGGTTTACTGGTTCCGGAAACCGTAGACGATGGGGTATGGGGAACAAAAGGATACAAAGGATTACTAA
AGATTCAATCCGATTATAATGCAGACGTCTTCTATAAAGAGAGTATAAAAAATGATACATCAATTAAACAAGCGGTAAAA
GCATATAATGATGATAAAGTTACTTTAGTTTTTGGACATGGAAGTGAATATTCCGGGATATTTAACACCCTTTCCAGTGA
ATATCCCAACATGCACTTTGTAAGCTTTAATGGAAACGCCACTGAGGAGAATACAACCAGTCTTCAATTTAAAGGGTATG
CAATGGGCTTCTTCGGGGGCATGACGGCAGCCTTTCAATCTAAAACGAATAAAATTGGTGTAATTGCTGCTTTTGACTGG
CAGCCCGAAGTTCAAGGTTTTATCGATGGAGCGAAATTCCAAAAAAGTGAATCTGAGCTCATTGTCGAGTATACCAATCA
CTGGGACGATCAAACTATTGCTTTTGAAAAGCTTGAGGGTTTAATGAATCAGGGAGTTGATGTTGTATATCCGGCAGGTG
ACGGCTATAATGTATCTGTAATCGAAAAGCTGAAGGAAAAGGGACTTTATGCCATTGGCTATGTATCTGATCAATCTGAT
TTAGGAGAATCCACGGTTTTAACGAGTACGGTGCAGCATGCAGATAAGCTGTATAGCGTCGTTGCGGAAAGGTTCGCAAA
TGATGAACTCGATTCAGGAAATCTTGAATTTGATTTTGAAGACGGAGTCATTTCTATGGGGAAATATAGTCCTGTCATTC
CAAAAGAATTTCAAGCTGAGATGAAGCAACATGTTAAAGCCTACATCGAAACAGGTAAATTGCCGAACGGAAAGGAATCG
AAACAATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-316)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

52.698

97.826

0.516

Multiple sequence alignment