Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACCB35_RS02880 Genome accession   NZ_CP168654
Coordinates   563659..564609 (+) Length   316 a.a.
NCBI ID   WP_374055650.1    Uniprot ID   -
Organism   Rossellomorea sp. FM04394     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 558659..569609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACCB35_RS02865 motA 560102..560893 (+) 792 WP_374055647.1 flagellar motor stator protein MotA -
  ACCB35_RS02870 motB 560880..561671 (+) 792 WP_374055648.1 flagellar motor protein MotB -
  ACCB35_RS02875 - 562029..563420 (+) 1392 WP_374055649.1 alanine/glycine:cation symporter family protein -
  ACCB35_RS02880 ceuB 563659..564609 (+) 951 WP_374055650.1 ABC transporter permease Machinery gene
  ACCB35_RS02885 - 564602..565552 (+) 951 WP_374055651.1 iron chelate uptake ABC transporter family permease subunit -
  ACCB35_RS02890 - 565549..566310 (+) 762 WP_374055652.1 ABC transporter ATP-binding protein -
  ACCB35_RS02895 - 566330..567280 (+) 951 WP_374055653.1 siderophore ABC transporter substrate-binding protein -
  ACCB35_RS02900 - 567282..567590 (+) 309 WP_044339256.1 antibiotic biosynthesis monooxygenase -
  ACCB35_RS02905 - 567712..568806 (+) 1095 WP_374055654.1 carbohydrate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34757.22 Da        Isoelectric Point: 10.1633

>NTDB_id=1044755 ACCB35_RS02880 WP_374055650.1 563659..564609(+) (ceuB) [Rossellomorea sp. FM04394]
MKQRYLIIALILLSLLSLFVGVSHITPMDLLQFQSEETQIFLISRLPRLLAILLAGAGMSIAGLIMQSLSRNKFVSPTTV
GTIDAARLGILVSMIVFVNASILEKMIVAFAFALAGTLLFMQILDRIKFKDAVFIPLVGLMLGNVLSSVTTFFAYKANVI
QNMAAWLQGDFSLIMKGRYELLYISIPIMIIAYLYANRFTVAGMGEDFSKNLGVSYRRIVNIGLVLVALITVTVVLTVGM
IPFLGLIIPNIVSIFKGDHLQKTLPHTALLGAIFLLVCDILGRVIIYPYEISISLMVGVIGSAIFLYLLVRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1044755 ACCB35_RS02880 WP_374055650.1 563659..564609(+) (ceuB) [Rossellomorea sp. FM04394]
ATGAAACAACGTTACCTTATTATTGCGCTTATCTTACTGTCACTCCTGTCTTTATTTGTAGGAGTGAGCCATATTACACC
GATGGATTTACTGCAATTTCAATCCGAAGAAACACAGATTTTTCTCATCAGTCGATTACCGAGATTGCTGGCAATCTTAC
TTGCCGGTGCGGGTATGAGCATTGCAGGGTTGATCATGCAAAGCTTGAGTCGAAACAAGTTCGTATCCCCTACGACAGTG
GGAACCATAGATGCTGCCAGGCTGGGAATCCTTGTATCGATGATTGTGTTTGTGAATGCCTCAATACTTGAGAAGATGAT
TGTTGCCTTTGCATTTGCGTTAGCCGGCACGCTGCTTTTTATGCAAATACTCGATCGGATCAAGTTCAAGGATGCAGTCT
TTATTCCCCTCGTCGGGTTGATGCTTGGGAATGTGTTATCTTCGGTGACAACGTTTTTTGCCTACAAGGCAAATGTGATT
CAAAATATGGCAGCATGGCTGCAGGGTGATTTTTCATTAATCATGAAAGGTCGATATGAACTTTTATACATAAGCATTCC
CATTATGATCATTGCCTATCTTTATGCAAATAGGTTTACTGTCGCCGGGATGGGGGAGGACTTCTCCAAGAATCTGGGTG
TTTCTTATCGCAGGATAGTGAATATTGGCCTCGTGCTGGTTGCGCTCATTACGGTGACAGTCGTCTTGACCGTCGGGATG
ATTCCATTCCTGGGGTTGATCATACCCAATATCGTTTCCATCTTCAAAGGAGATCACTTACAGAAGACATTGCCACATAC
GGCCTTACTTGGAGCGATCTTCCTTCTCGTCTGTGATATTTTAGGCCGGGTAATCATCTACCCGTATGAAATCTCGATCA
GTTTAATGGTTGGGGTCATCGGCAGTGCCATCTTCTTATACTTGCTGGTAAGGAGGAAGGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.716

99.051

0.522

Multiple sequence alignment