Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8493_RS06835 Genome accession   NZ_AP028341
Coordinates   1320521..1321489 (+) Length   322 a.a.
NCBI ID   WP_317647127.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10328     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1315521..1326489
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8493_RS06810 (B10328_13330) - 1316373..1317101 (-) 729 WP_002825238.1 phosphatidate cytidylyltransferase -
  R8493_RS06815 (B10328_13340) - 1317110..1317448 (-) 339 WP_002825237.1 hypothetical protein -
  R8493_RS06820 (B10328_13350) - 1317451..1318758 (-) 1308 WP_317647126.1 NFACT family protein -
  R8493_RS06825 (B10328_13360) - 1318821..1319396 (+) 576 WP_200408851.1 molybdenum cofactor guanylyltransferase -
  R8493_RS06830 (B10328_13370) - 1319393..1320388 (+) 996 WP_002825231.1 phospholipase A -
  R8493_RS06835 (B10328_13380) ceuB 1320521..1321489 (+) 969 WP_317647127.1 ABC transporter permease Machinery gene
  R8493_RS06840 (B10328_13390) - 1321482..1322420 (+) 939 WP_042963744.1 iron chelate uptake ABC transporter family permease subunit -
  R8493_RS06845 (B10328_13400) - 1322417..1323172 (+) 756 WP_042963747.1 ABC transporter ATP-binding protein -
  R8493_RS06850 (B10328_13410) - 1323187..1324176 (+) 990 WP_042963750.1 siderophore ABC transporter substrate-binding protein -
  R8493_RS06855 (B10328_13420) - 1324342..1324896 (+) 555 WP_317647128.1 hypothetical protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35478.41 Da        Isoelectric Point: 9.5069

>NTDB_id=104467 R8493_RS06835 WP_317647127.1 1320521..1321489(+) (ceuB) [Campylobacter coli strain BCH-10328]
MLFKHLFSLNILLILLVVFGMISLLIGVIRINLDDIFSLSATQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFTGASFFTQAIIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNLGISYNGILFLGLMIVSIITSLV
IVSVGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=104467 R8493_RS06835 WP_317647127.1 1320521..1321489(+) (ceuB) [Campylobacter coli strain BCH-10328]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATGATAAGCTTATTGATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCGCTACCCAGCTTGAAATCATTTTACTTACAAGAATTCCTA
GACTTATAGCAATTTTACTCACAGGAATGAGTCTTAGTATATGTGGGCTTATCATGCAACAACTCACGCAAAATAAATTC
GTTTCCCCAACTACAGCAGGGACCATGGATTGTGCTAAATTTGGCATACTTATTTCTTTAATATTTTTTACTGGGGCGTC
TTTTTTCACTCAAGCTATCATTGCTTCTATATTTGCACTTTTGGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATCA
AACTCAAAGATGTGATTTTTGTACCTTTGATAGGCTTGATGTTTGGAGGTATTATTAGTGCTATAACCACTTTTTTTGCC
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAAGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTCTACATTTCTTTACCACTTTTTATACTTGCTTATTTTTTAGCTCATAAAATCACCATAGTTGGCATGGGTGAAGATA
TAGCTTTAAATCTTGGAATTTCTTATAATGGTATATTATTTTTAGGCTTAATGATTGTAAGCATTATCACTAGCTTAGTG
ATTGTAAGCGTTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGGCTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTGATCTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

91.925

100

0.919

Multiple sequence alignment