Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   QOR71_RS00265 Genome accession   NZ_OX461103
Coordinates   32511..33272 (+) Length   253 a.a.
NCBI ID   WP_001266269.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-149     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27511..38272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR71_RS00250 - 28803..30146 (+) 1344 WP_000746079.1 CHAP domain-containing protein -
  QOR71_RS00255 - 30270..31238 (+) 969 WP_000122450.1 ribose-phosphate diphosphokinase -
  QOR71_RS00260 - 31346..32521 (+) 1176 WP_000171457.1 pyridoxal phosphate-dependent aminotransferase -
  QOR71_RS00265 recO 32511..33272 (+) 762 WP_001266269.1 DNA repair protein RecO Machinery gene
  QOR71_RS00270 - 33335..34213 (+) 879 WP_000420124.1 type II CAAX endopeptidase family protein -
  QOR71_RS00275 plsX 34291..35283 (+) 993 WP_000717407.1 phosphate acyltransferase PlsX -
  QOR71_RS00280 - 35294..35533 (+) 240 WP_000085641.1 phosphopantetheine-binding protein -
  QOR71_RS00285 purC 35657..36361 (+) 705 WP_001064659.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29668.10 Da        Isoelectric Point: 6.2989

>NTDB_id=1044584 QOR71_RS00265 WP_001266269.1 32511..33272(+) (recO) [Streptococcus agalactiae isolate MRI Z2-149]
MRVSQTYGLVLYNRNYREDDKLVKIFTETEGKRMFFVKHASKSKFNAVLQPLTIAHFILKINDNGLSYIDDYKEVLAFQE
INSDLFKLSYASYITSLADVAISDNVADAQLFIFLKKTLELIEDGLDYEILTNIFEVQLLERFGVALNFHDCVFCHRAGL
PFDFSHKYSGLLCPNHYYKDERRNHLDPNMLYLINRFQSIQFDDLQTISVKPEMKLKIRQFLDMIYDEYVGIHLKSKKFI
DDLSSWGSIMKSD

Nucleotide


Download         Length: 762 bp        

>NTDB_id=1044584 QOR71_RS00265 WP_001266269.1 32511..33272(+) (recO) [Streptococcus agalactiae isolate MRI Z2-149]
ATGAGGGTTAGTCAAACATACGGTCTCGTTTTGTATAATCGTAATTATCGTGAAGATGATAAATTAGTTAAAATCTTTAC
GGAGACTGAGGGAAAAAGGATGTTTTTTGTAAAGCATGCTTCAAAGTCAAAATTCAATGCTGTGCTCCAACCTTTGACTA
TTGCTCATTTTATTTTAAAAATTAATGATAATGGTCTTTCTTATATTGATGATTATAAAGAAGTTTTAGCATTTCAAGAA
ATTAATTCAGACTTGTTTAAGTTGTCATATGCGAGTTATATTACTTCTTTGGCTGATGTGGCTATTAGTGATAATGTAGC
GGATGCTCAATTATTTATTTTCCTAAAGAAAACGTTAGAATTGATTGAGGACGGTTTAGATTATGAGATTCTAACGAATA
TTTTTGAAGTACAACTACTAGAGAGGTTCGGTGTTGCTTTAAATTTTCATGATTGTGTTTTTTGTCATAGGGCAGGATTA
CCTTTTGATTTTTCACACAAATATTCTGGATTATTATGTCCAAACCATTATTATAAAGACGAGAGAAGAAACCACCTAGA
TCCTAATATGCTATACTTAATCAATCGTTTTCAGTCAATTCAATTTGATGATTTACAAACAATTTCTGTGAAACCTGAGA
TGAAACTTAAAATTCGTCAATTTTTGGACATGATTTACGATGAATATGTAGGGATTCATCTTAAAAGTAAAAAATTTATT
GATGATTTGTCTAGTTGGGGAAGTATTATGAAATCAGATTAA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(1-73)

Recombination protein O C terminal (RecO_C)

(83-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

64.113

98.024

0.628