Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   R8493_RS03130 Genome accession   NZ_AP028341
Coordinates   615410..615856 (+) Length   148 a.a.
NCBI ID   WP_002825371.1    Uniprot ID   A0A2A4L594
Organism   Campylobacter coli strain BCH-10328     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 610410..620856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8493_RS03110 (B10328_06080) - 611363..612786 (+) 1424 Protein_598 anaerobic C4-dicarboxylate transporter -
  R8493_RS03115 (B10328_06090) uvrB 612821..614794 (-) 1974 WP_025398823.1 excinuclease ABC subunit UvrB -
  R8493_RS03120 (B10328_06100) - 614948..615178 (+) 231 WP_002776426.1 hypothetical protein -
  R8493_RS03125 (B10328_06110) - 615168..615413 (+) 246 WP_002776428.1 hypothetical protein -
  R8493_RS03130 (B10328_06120) Cj0683 615410..615856 (+) 447 WP_002825371.1 type II secretion system protein Machinery gene
  R8493_RS03135 (B10328_06130) - 615853..617691 (+) 1839 WP_230094080.1 primosomal protein N' -
  R8493_RS03140 - 617701..619094 (-) 1394 Protein_604 DUF2972 domain-containing protein -
  R8493_RS03145 (B10328_06160) ispG 619240..620313 (+) 1074 WP_096568960.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17303.13 Da        Isoelectric Point: 8.4538

>NTDB_id=104457 R8493_RS03130 WP_002825371.1 615410..615856(+) (Cj0683) [Campylobacter coli strain BCH-10328]
MKKAFTLLELVFVILILGILASLSFSFANQNKNDAKLLKLKIDYEMLNSALSLMRTQVELKQISSFSPNLDEAKNNTQKE
KLFYCQTSQNCTYSLLHTPIYSSFNAWMKTAPNRYRFFLNTKEWVDFFYNADFAILECLSEKYCKELL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=104457 R8493_RS03130 WP_002825371.1 615410..615856(+) (Cj0683) [Campylobacter coli strain BCH-10328]
ATGAAAAAGGCTTTTACTCTCTTAGAGCTTGTTTTTGTGATATTGATTTTGGGGATATTGGCAAGTTTAAGCTTCTCTTT
TGCCAATCAAAATAAAAACGATGCGAAATTATTAAAATTGAAAATAGATTATGAAATGCTAAATTCAGCCCTATCCCTTA
TGCGTACTCAAGTTGAACTCAAACAAATCAGTTCTTTTTCTCCTAATCTTGATGAAGCAAAAAACAATACTCAAAAAGAA
AAACTTTTTTACTGCCAAACTAGTCAAAATTGCACCTATTCTTTACTTCACACACCTATTTATTCTAGTTTTAATGCTTG
GATGAAAACAGCACCCAATCGATATAGATTTTTTTTAAATACAAAAGAATGGGTTGATTTTTTTTATAATGCTGATTTTG
CTATTTTAGAATGTTTGAGTGAAAAATATTGTAAAGAATTATTATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A4L594

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.784

100

0.588

Multiple sequence alignment