Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsE   Type   Machinery gene
Locus tag   R8633_RS07220 Genome accession   NZ_AP028340
Coordinates   1412719..1414278 (-) Length   519 a.a.
NCBI ID   WP_002858863.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10312     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1407719..1419278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8633_RS07195 (B10312_14360) - 1407729..1408163 (+) 435 WP_002858861.1 flagellar protein FlgN -
  R8633_RS07200 (B10312_14370) flgK 1408173..1409999 (+) 1827 WP_002858862.1 flagellar hook-associated protein FlgK -
  R8633_RS07205 (B10312_14380) - 1410016..1410780 (+) 765 WP_002851318.1 TIGR02757 family protein -
  R8633_RS07210 (B10312_14390) - 1410784..1411548 (+) 765 WP_002855821.1 TSUP family transporter -
  R8633_RS07215 (B10312_14400) ctsF 1411541..1412722 (-) 1182 WP_002868229.1 type II secretion system F family protein Machinery gene
  R8633_RS07220 (B10312_14410) ctsE 1412719..1414278 (-) 1560 WP_002858863.1 GspE/PulE family protein Machinery gene
  R8633_RS07225 (B10312_14420) ctsX 1414268..1414855 (-) 588 WP_002858864.1 hypothetical protein Machinery gene
  R8633_RS07230 (B10312_14430) ctsP 1414859..1415467 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8633_RS07235 (B10312_14440) ctsD 1415460..1416872 (-) 1413 WP_002855316.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8633_RS07240 (B10312_14450) ctsR 1416850..1417161 (-) 312 WP_002855438.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 519 a.a.        Molecular weight: 60148.95 Da        Isoelectric Point: 5.8204

>NTDB_id=104449 R8633_RS07220 WP_002858863.1 1412719..1414278(-) (ctsE) [Campylobacter jejuni strain BCH-10312]
MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLHFVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMI
IRSKPCSLELLEQVKTFMICEKIDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRKTQDGSFELDFENERYDFRVSCL
PLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILKKILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDP
IEYKIPLVQQILLNSKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALSTIDRLLDMQ
AKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERCHHSGFFGRELIAECLEINEDLSCAIRENQD
KTILMELAKKYGFQTMFEQGLKKAKEGLTSIDELLRVVR

Nucleotide


Download         Length: 1560 bp        

>NTDB_id=104449 R8633_RS07220 WP_002858863.1 1412719..1414278(-) (ctsE) [Campylobacter jejuni strain BCH-10312]
ATGGAAAGTAGAATGGATAAAATTTTTCAAGCTTATATTGATAATGAAATAAGTCTTGATGAAATTTGCACTAAATTTAA
TATCACTTCTTGGGATTTTTTTAAAAAATTAGCAAATTTTTGTAATTTGCATTTTGTTGATTTAGATGAAGATAATGATT
TTATTTATGAAGGTATACCTTTTTCTTTACTTTTAAAATTTAAATTTCTGCTTATTAAAAACAATGACGGCTTTATGATT
ATTAGATCCAAACCTTGTTCTTTAGAGCTTTTAGAGCAAGTTAAGACTTTTATGATTTGTGAAAAAATCGACACTGCAAT
TGCCGATGAATTAAAGATAGCTAAAATTTTAAATCAAATTCGCATTCAAGAGGAGATTAAAAGATTAAGCATTAAGCTTA
GACTTGAATGGCAAGAAAATCATAAAAGAGATGATCAAAGTTGCATCAGTCAAATTTTTGATTTTTTATTACATGAAATT
TTATCTTTTCATGCGAGTGATATTCATATAGAGGCAAGAAATGATGATGCTTTGATTAGGTTTAGGGTTGATGGAATTTT
GCGTGAATTTGCTATTTTTGAGAAGGATATTTATGAAGCTTTGGTTTTTCATGTCAAATTTTTAGCTTGTTTGAATTTAG
CTGAATCAAGAAAAACACAAGATGGAAGTTTTGAATTAGATTTTGAAAATGAAAGATATGATTTTCGTGTTTCATGTTTG
CCTTTGATTTATGGCGAAAGTGTTGTTATAAGAATTTTAAAACATGATAAAGAAATTTTGGATTTGTATAAACTAAATCT
TGGAAATAAAAATTTAGAAATTTTAAAAAAGATTTTACATCGTCCCAATGGAATGATTTTATTAACCGGTCCTACAGGTA
GTGGTAAAAGCACAACTTTATACGCGTGTTTAAATGAGTTGAAAAGTATTGAAAAAAAGATTATTTCCGCAGAAGATCCT
ATAGAATATAAAATTCCTTTAGTGCAGCAAATTTTGCTCAATTCAAAAGTTGGAGTCGAGTTTAATAGTGTTTTAAGAGC
AATTTTAAGGCAAGATCCTGATATTATCATGATAGGAGAAATTCGCGATGAAGAAAGTTTAGATATTGCACTTAAAGCTT
CTTTAACAGGTCATTTGCTTTTAAGCACCTTGCATACTAATGATGCTCTTAGTACCATTGATAGGCTTTTGGATATGCAA
GCAAAAAGTTACTTGATAGCATCGGCTTTGAGTCTTGTTATAGCACAGCGTTTGGTTAGAAAACTTTGTCCTTGGTGTAA
GCAAAAAAGCAAAAAACATTATATTGAATTTGAAGGTGAATTTTTTGAACCAAAAGGATGTGAGCGTTGTCATCATAGTG
GATTTTTTGGCAGAGAATTAATCGCTGAGTGCTTAGAGATCAATGAAGATTTATCTTGTGCAATTAGGGAAAATCAAGAT
AAAACGATTTTAATGGAGCTTGCAAAAAAATATGGCTTTCAAACTATGTTTGAACAAGGTTTAAAAAAAGCCAAAGAAGG
TCTTACAAGTATAGATGAGCTTTTAAGGGTTGTAAGATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(157-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsE Campylobacter jejuni subsp. jejuni 81-176

99.807

100

0.998

Multiple sequence alignment