Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpE   Type   Regulator
Locus tag   QOR59_RS03380 Genome accession   NZ_OX460985
Coordinates   604369..606201 (+) Length   610 a.a.
NCBI ID   WP_283571925.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-307     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 599369..611201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR59_RS03375 - 602619..604367 (+) 1749 WP_283571924.1 DNA topoisomerase -
  QOR59_RS03380 clpE 604369..606201 (+) 1833 WP_283571925.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  QOR59_RS03385 - 606292..606639 (+) 348 WP_017646909.1 TrbC/VirB2 family protein -
  QOR59_RS03390 - 606650..607723 (+) 1074 WP_017646910.1 hypothetical protein -
  QOR59_RS03395 - 607741..608484 (+) 744 WP_017646911.1 LPXTG cell wall anchor domain-containing protein -
  QOR59_RS03400 - 608554..611151 (+) 2598 WP_283571926.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 610 a.a.        Molecular weight: 68613.55 Da        Isoelectric Point: 5.0210

>NTDB_id=1044299 QOR59_RS03380 WP_283571925.1 604369..606201(+) (clpE) [Streptococcus agalactiae isolate MRI Z2-307]
MEDELKTPYLDKYTDNLSAKVAKKSDDYQVYGREKEVQAVIISLLRRTKNNPILVGEAGVGKTAIVEGLTLAIMRGQVPE
ALKGLTVRSLELSSLMSEDDGGFIAKFKKIIEEMVATRGHNLLFVDEFHTIVGAGSQDGQALDAGNVIKPVLARGDIQLI
GATTLDEFHDYIETDRALERRMQPVMVEEPTIPQAITIIDQAKMIYEKFHGIQISSEAVRQAIRLSVRYITDRFLPDKAF
DLIDEASTFAVAEGKATVTDEDIAQVLKDKTGIPVTTILKGDQDRLEGFKEKLMARVKGQEDAIEAIVDAVTIAQAGLQD
ENKPISSFLFLGPTGVGKTELSKAVAEALFDDEDAMIRFDMSEFKKKEDVAKLIGNRETRTKGQLTEGVKRKPYSVLLLD
EVEKAHSEVMDLFLQVLDDGRLTDSSGRLISFKNVIVIMTTNIGAKKIINKWELKGNFKDLTDRDRQQFEKSMESELQNE
FRPEFLNRIENKIIFNLLERNVIEEIAEKNLSKISDRMKRQNLTLSYEPSLIQYLSDVGTDVKNGARPLERLIKRKVLAP
ISAKSLTLDKSKQTYNVHLWVDGEAPDDRHRKDLRQIQLDIEGEMDAFFS

Nucleotide


Download         Length: 1833 bp        

>NTDB_id=1044299 QOR59_RS03380 WP_283571925.1 604369..606201(+) (clpE) [Streptococcus agalactiae isolate MRI Z2-307]
GTGGAAGACGAATTGAAGACCCCCTATCTTGATAAGTACACTGATAATTTGTCAGCTAAGGTTGCTAAAAAATCAGATGA
CTACCAAGTTTATGGTCGTGAAAAAGAAGTACAAGCGGTCATTATCTCACTTCTCAGAAGAACTAAAAATAATCCTATTC
TAGTGGGAGAAGCAGGGGTTGGTAAAACAGCCATAGTGGAAGGTCTAACGCTTGCTATTATGCGTGGACAAGTTCCTGAA
GCTTTAAAAGGCTTAACGGTTCGTTCCCTGGAACTTTCTAGTTTGATGAGTGAAGATGACGGTGGCTTTATTGCTAAGTT
TAAGAAAATCATCGAAGAGATGGTTGCCACACGCGGACATAATCTTCTCTTTGTAGATGAATTTCATACCATAGTTGGTG
CAGGCAGCCAGGACGGTCAAGCCCTCGATGCGGGAAATGTTATTAAACCAGTTTTGGCACGTGGGGATATTCAGCTGATT
GGCGCAACTACTTTAGATGAGTTCCATGATTACATCGAAACCGATAGGGCCCTGGAACGTCGGATGCAGCCTGTTATGGT
TGAAGAGCCAACGATTCCACAAGCTATAACCATTATTGATCAGGCAAAAATGATTTATGAAAAGTTCCATGGGATTCAAA
TTTCCTCAGAAGCCGTTCGTCAAGCAATTCGTCTATCTGTCCGCTATATTACAGATCGTTTTTTACCAGATAAAGCTTTT
GACCTAATCGATGAAGCTTCTACGTTTGCAGTGGCTGAAGGAAAAGCAACTGTTACTGATGAAGATATAGCCCAGGTCTT
AAAAGATAAGACAGGGATTCCTGTGACGACAATTCTAAAAGGAGACCAGGATCGTTTAGAGGGCTTCAAAGAAAAGTTGA
TGGCTCGAGTCAAAGGACAGGAAGATGCCATTGAAGCTATTGTAGATGCGGTAACCATTGCTCAGGCAGGGTTACAAGAT
GAAAATAAGCCGATCTCTTCATTTCTCTTCCTGGGCCCAACTGGAGTTGGTAAAACAGAATTATCTAAGGCAGTTGCAGA
AGCACTCTTTGATGATGAAGATGCGATGATTCGCTTTGATATGTCTGAGTTCAAGAAAAAAGAAGATGTGGCTAAGCTAA
TTGGTAATCGTGAGACACGAACCAAAGGACAGTTGACCGAAGGTGTGAAACGAAAACCTTATTCTGTTTTGTTGCTAGAT
GAAGTCGAAAAAGCCCATAGCGAAGTGATGGACTTATTCTTGCAAGTGTTAGACGATGGTCGCTTAACAGATAGCTCTGG
TCGTTTAATTAGCTTTAAGAACGTTATTGTCATTATGACGACTAACATTGGTGCTAAGAAGATTATCAATAAGTGGGAGT
TGAAGGGTAATTTTAAAGATTTGACTGATCGTGATAGGCAGCAATTTGAAAAGTCTATGGAAAGCGAGCTACAGAATGAG
TTTCGTCCAGAGTTTCTTAATCGTATCGAAAATAAAATTATCTTCAACCTCTTAGAGAGAAATGTCATTGAAGAAATTGC
AGAGAAGAACCTCTCTAAAATTTCAGATCGGATGAAGCGACAAAATCTAACATTGTCGTATGAGCCTAGTTTGATTCAGT
ATCTCTCAGATGTTGGTACCGACGTGAAAAATGGTGCACGTCCTTTAGAGCGTTTAATTAAGCGAAAAGTATTAGCACCT
ATTTCTGCTAAAAGCTTAACCTTGGATAAAAGTAAACAAACCTATAATGTTCATTTATGGGTTGATGGGGAAGCACCAGA
TGATCGACACAGAAAAGATTTAAGACAAATTCAGTTAGATATTGAAGGAGAAATGGATGCCTTTTTCAGCTGA

Domains

Predicted by InterProScan.

AAA lid domain (AAA_lid_9)

(192-264)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(498-567)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-165)

AAA domain (Cdc48 subfamily) (AAA_2)

(323-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpE Streptococcus pneumoniae Rx1

42.881

99.016

0.425
  clpE Streptococcus pneumoniae D39

42.881

99.016

0.425
  clpE Streptococcus pneumoniae R6

42.881

99.016

0.425
  clpE Streptococcus pneumoniae TIGR4

42.881

99.016

0.425
  clpC Bacillus subtilis subsp. subtilis str. 168

39.164

100

0.415
  clpE Streptococcus mutans UA159

41.186

99.508

0.41
  clpC Lactococcus lactis subsp. cremoris KW2

40.362

99.508

0.402
  clpC Streptococcus mutans UA159

39.597

97.705

0.387
  clpC Streptococcus pneumoniae Rx1

39.696

97.049

0.385
  clpC Streptococcus pneumoniae D39

39.696

97.049

0.385
  clpC Streptococcus pneumoniae TIGR4

39.696

97.049

0.385
  clpC Streptococcus thermophilus LMD-9

39.226

97.377

0.382
  clpC Streptococcus thermophilus LMG 18311

39.057

97.377

0.38
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

37.684

100

0.379