Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACEPOS_RS03760 Genome accession   NZ_CP168497
Coordinates   770081..771445 (-) Length   454 a.a.
NCBI ID   WP_137042404.1    Uniprot ID   -
Organism   Staphylococcus aureus strain J23     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 765081..776445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPOS_RS03745 (ACEPOS_03745) cysE 765901..766548 (-) 648 WP_001805237.1 serine O-acetyltransferase -
  ACEPOS_RS03750 (ACEPOS_03750) gltX 766972..768426 (-) 1455 WP_064133472.1 glutamate--tRNA ligase -
  ACEPOS_RS03755 (ACEPOS_03755) - 768983..770056 (-) 1074 WP_001028376.1 PIN/TRAM domain-containing protein -
  ACEPOS_RS03760 (ACEPOS_03760) radA 770081..771445 (-) 1365 WP_137042404.1 DNA repair protein RadA Machinery gene
  ACEPOS_RS03765 (ACEPOS_03765) - 771930..774386 (-) 2457 WP_000897132.1 ATP-dependent Clp protease ATP-binding subunit -
  ACEPOS_RS03770 (ACEPOS_03770) - 774400..775407 (-) 1008 WP_000149505.1 protein arginine kinase -
  ACEPOS_RS03775 (ACEPOS_03775) - 775397..775963 (-) 567 WP_271019867.1 UvrB/UvrC motif-containing protein -
  ACEPOS_RS03780 (ACEPOS_03780) - 775982..776443 (-) 462 WP_000551762.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49825.32 Da        Isoelectric Point: 7.0049

>NTDB_id=1044292 ACEPOS_RS03760 WP_137042404.1 770081..771445(-) (radA) [Staphylococcus aureus strain J23]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIVEKAANSKHGVKTKELAGKVQKLNSIKHETTPRVLTDSAEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKKKVLYITGEESLSQTKLRAERLDEDSSELQVLAETDLEVIYQTVK
EEQPDLLVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVNNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVKLTEPAVDLSVIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPKNNIGGWTYPEGIQVIGVTTVHEALSFALHS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=1044292 ACEPOS_RS03760 WP_137042404.1 770081..771445(-) (radA) [Staphylococcus aureus strain J23]
TTGGCCAAGAAAAAAGTGATTTTTGAATGTATGGCTTGTGGTTATCAATCTCCTAAATGGATGGGGAAATGTCCTAATTG
TGGCGCTTGGAATCAAATGGAGGAAATTGTTGAAAAAGCAGCCAATTCTAAACATGGAGTGAAAACCAAGGAATTAGCAG
GTAAAGTACAAAAATTAAATAGTATTAAACATGAAACAACGCCGAGAGTGTTAACAGATTCAGCAGAATTCAACCGTGTA
TTAGGTGGAGGTATTGTGAGTGGATCGTTAGTACTTATTGGTGGGGATCCAGGTATTGGTAAGTCAACGTTACTTTTACA
AATTTGTGCATCGTTATCTCAAAAGAAAAAAGTACTATATATTACTGGAGAAGAATCGCTTAGTCAGACTAAATTACGTG
CAGAGCGGTTAGATGAAGATTCAAGTGAATTGCAAGTATTAGCTGAAACAGATCTTGAAGTTATTTATCAAACAGTAAAA
GAAGAACAACCTGATTTACTAGTAGTGGATTCGATTCAAACAATATATCATCCTGAAATCAGCTCTGCGCCAGGTTCTGT
TTCACAAGTTCGTGAAAGTACACAAAGTTTAATGAATATTGCTAAACAAATGAACATTGCAACTTTTATAGTGGGTCATG
TAACGAAAGAAGGTCAAATTGCCGGCCCAAGATTGCTAGAACACATGGTTGATACTGTGCTTTATTTTGAAGGCGATGAA
CACCACGCATATCGAATTTTGCGAGCTGTTAAAAACCGTTTTGGTTCAACGAATGAAATGGGAATCTTCGAAATGAAGCA
AAGTGGATTAAAAGGTGTAAATAATCCATCTGAAATGTTTTTAGAAGAACGTTCAACAAATGTTCCAGGTTCAACAATTG
TTGCAACCATGGAGGGAACCAGACCACTTTTAATAGAAGTTCAAGCGCTGGTAACTCCAACGACTTTTAACAATCCGAGA
CGAATGGCAACAGGGATTGATCATAATCGATTAAGTTTGTTGATGGCTGTTTTGGAAAAGAAAGAAAATTATCTATTACA
ACAACAAGATGCTTATATCAAAGTAGCTGGCGGTGTAAAGTTAACGGAGCCAGCAGTTGATTTAAGTGTAATTGTAGCAA
CTGCGTCTAGCTTTAAAGATAAAGCTGTCGACGGATTAGATTGCTATATTGGAGAAGTTGGTTTAACGGGTGAGGTACGT
CGTGTATCTCGGATAGAACAACGCGTGCAAGAGGCTGCAAAACTAGGTTTCAAACGTGTAATTATTCCTAAAAATAATAT
AGGCGGATGGACATATCCTGAAGGTATACAAGTAATAGGTGTAACTACTGTACATGAAGCATTGTCATTTGCTCTTCATT
CATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-426)

AAA domain (AAA_25)

(77-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.674
  radA Streptococcus pneumoniae Rx1

61.589

99.78

0.615
  radA Streptococcus pneumoniae D39

61.589

99.78

0.615
  radA Streptococcus pneumoniae R6

61.589

99.78

0.615
  radA Streptococcus pneumoniae TIGR4

61.589

99.78

0.615
  radA Streptococcus mitis NCTC 12261

61.589

99.78

0.615
  radA Streptococcus mitis SK321

61.589

99.78

0.615

Multiple sequence alignment