Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACEPXG_RS18520 Genome accession   NZ_CP168496
Coordinates   3809696..3811066 (-) Length   456 a.a.
NCBI ID   WP_391205678.1    Uniprot ID   -
Organism   Psychrobacillus sp. L4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3804696..3816066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXG_RS18495 (ACEPXG_18495) cysE 3804697..3805368 (-) 672 WP_391205667.1 serine O-acetyltransferase -
  ACEPXG_RS18500 (ACEPXG_18500) gltX 3805704..3807167 (-) 1464 WP_391205670.1 glutamate--tRNA ligase -
  ACEPXG_RS18505 (ACEPXG_18505) ispF 3807238..3807717 (-) 480 WP_391205672.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACEPXG_RS18510 (ACEPXG_18510) ispD 3807722..3808411 (-) 690 WP_151701759.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACEPXG_RS18515 (ACEPXG_18515) - 3808482..3809570 (-) 1089 WP_391205675.1 PIN/TRAM domain-containing protein -
  ACEPXG_RS18520 (ACEPXG_18520) radA 3809696..3811066 (-) 1371 WP_391205678.1 DNA repair protein RadA Machinery gene
  ACEPXG_RS18525 (ACEPXG_18525) - 3811125..3813572 (-) 2448 WP_391205681.1 ATP-dependent Clp protease ATP-binding subunit -
  ACEPXG_RS18530 (ACEPXG_18530) - 3813569..3814663 (-) 1095 WP_391210001.1 protein arginine kinase -
  ACEPXG_RS18535 (ACEPXG_18535) - 3814653..3815198 (-) 546 WP_391205684.1 UvrB/UvrC motif-containing protein -
  ACEPXG_RS18540 (ACEPXG_18540) - 3815220..3815687 (-) 468 WP_391205687.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50067.74 Da        Isoelectric Point: 6.6968

>NTDB_id=1044278 ACEPXG_RS18520 WP_391205678.1 3809696..3811066(-) (radA) [Psychrobacillus sp. L4]
MAKRKTKFMCNSCGYESAKWMGRCPGCGEWNTMVEELEVVSKGPKRSFQHSTGVAQKATPIIAVETADEPRVETELMELN
RVLGGGIVPGSLILIGGDPGIGKSTLLLQVSALLANKGERVLYISGEESIRQTKLRAERLGVTSAELYIYSETNLELINE
TIDSVEPRFVIVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRLLEHMVDTVLYFE
GERHHTYRILRSQKNRFGSTNEIAIFEMVQQGLKEVLNPSELFLQERSHGAAGSAIVASMEGTRPILVEIQALVTQSSFN
YPKRMATGIDQNRISLLMAVLEKRMGLLLQTQDAYIKVAGGVKLDEPAIDLAVLVSIVSSFRDTGVAPTDCFVGEVGLTG
EVRRVSRIEQRVQEATKLGFKRIVIPASNLGGWDYPKGIQVIGVETVNEVMKEAFQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1044278 ACEPXG_RS18520 WP_391205678.1 3809696..3811066(-) (radA) [Psychrobacillus sp. L4]
ATGGCCAAACGAAAAACGAAGTTTATGTGTAATTCTTGCGGTTATGAGTCTGCCAAATGGATGGGAAGATGTCCAGGATG
CGGAGAATGGAATACGATGGTAGAAGAGTTGGAGGTTGTTTCAAAAGGACCAAAACGATCTTTTCAACATTCTACGGGAG
TAGCTCAGAAAGCCACACCAATTATTGCGGTAGAGACAGCGGATGAACCGAGAGTAGAAACGGAACTCATGGAGTTGAAT
CGAGTACTTGGCGGTGGAATTGTGCCTGGTTCCCTTATTTTAATAGGTGGAGATCCGGGAATCGGAAAGTCGACTTTGCT
TTTACAAGTTTCTGCACTGCTCGCAAATAAGGGAGAACGCGTGTTATATATTTCCGGTGAAGAATCGATTAGACAGACGA
AGCTTCGTGCCGAGCGTTTGGGTGTCACATCTGCTGAACTGTACATATATTCCGAAACGAATTTAGAATTAATCAATGAA
ACAATTGATAGTGTGGAGCCTAGATTTGTGATTGTCGACTCCATTCAAACTGTACATCATCCGGAAGTGACAAGTGCTCC
AGGAAGTGTGTCTCAAGTGCGTGAATGTACAGCTGAACTAATGCGCATTGCTAAAACAAAAAATATAGCAATTTTCTTAG
TAGGACATGTAACGAAAGAAGGGCAAATTGCTGGACCACGTTTATTAGAGCATATGGTAGATACGGTTTTATATTTTGAG
GGAGAACGGCATCATACATACCGAATTTTACGGTCACAAAAAAATAGATTTGGTTCAACGAATGAAATTGCCATTTTTGA
GATGGTGCAGCAAGGTTTAAAAGAAGTGTTGAATCCATCTGAACTATTTTTGCAAGAGCGTTCACACGGAGCAGCTGGAT
CAGCCATTGTTGCTTCGATGGAAGGGACAAGACCCATCTTGGTTGAAATTCAAGCACTTGTTACGCAATCTAGTTTTAAT
TATCCAAAACGAATGGCAACAGGAATTGATCAAAATAGAATTTCTTTACTCATGGCGGTATTAGAAAAACGTATGGGATT
ACTTTTGCAAACACAAGATGCTTATATAAAAGTTGCGGGTGGAGTTAAATTAGACGAACCTGCAATTGATTTAGCCGTCC
TAGTAAGTATCGTATCCAGTTTCCGGGACACAGGAGTAGCACCTACCGATTGTTTTGTGGGGGAGGTTGGACTAACTGGC
GAAGTGAGACGAGTATCGAGAATTGAGCAAAGAGTGCAAGAGGCGACCAAATTAGGTTTTAAACGTATCGTGATTCCTGC
ATCCAATTTAGGCGGCTGGGATTATCCAAAAGGTATTCAAGTAATTGGGGTAGAAACTGTAAATGAAGTCATGAAAGAAG
CTTTTCAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-221)

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.179

100

0.715
  radA Streptococcus pneumoniae Rx1

63.077

99.781

0.629
  radA Streptococcus pneumoniae D39

63.077

99.781

0.629
  radA Streptococcus pneumoniae R6

63.077

99.781

0.629
  radA Streptococcus pneumoniae TIGR4

63.077

99.781

0.629
  radA Streptococcus mitis NCTC 12261

63.077

99.781

0.629
  radA Streptococcus mitis SK321

62.857

99.781

0.627

Multiple sequence alignment