Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACEPXG_RS16925 Genome accession   NZ_CP168496
Coordinates   3511668..3512618 (-) Length   316 a.a.
NCBI ID   WP_391204956.1    Uniprot ID   -
Organism   Psychrobacillus sp. L4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3506668..3517618
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXG_RS16900 (ACEPXG_16900) - 3507495..3508109 (-) 615 WP_391209972.1 uracil-DNA glycosylase -
  ACEPXG_RS16905 (ACEPXG_16905) - 3508194..3508805 (-) 612 WP_391204944.1 phosphatase PAP2 family protein -
  ACEPXG_RS16910 (ACEPXG_16910) - 3508951..3509946 (-) 996 WP_391204947.1 siderophore ABC transporter substrate-binding protein -
  ACEPXG_RS16915 (ACEPXG_16915) - 3509964..3510725 (-) 762 WP_391204950.1 ABC transporter ATP-binding protein -
  ACEPXG_RS16920 (ACEPXG_16920) - 3510722..3511675 (-) 954 WP_391204953.1 iron chelate uptake ABC transporter family permease subunit -
  ACEPXG_RS16925 (ACEPXG_16925) ceuB 3511668..3512618 (-) 951 WP_391204956.1 ABC transporter permease Machinery gene
  ACEPXG_RS16930 (ACEPXG_16930) - 3512879..3513721 (-) 843 WP_391204958.1 DUF6612 family protein -
  ACEPXG_RS16935 (ACEPXG_16935) - 3513795..3515282 (-) 1488 WP_391204961.1 peptide MFS transporter -
  ACEPXG_RS16940 (ACEPXG_16940) - 3515699..3517417 (+) 1719 WP_391204964.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34830.23 Da        Isoelectric Point: 10.5053

>NTDB_id=1044277 ACEPXG_RS16925 WP_391204956.1 3511668..3512618(-) (ceuB) [Psychrobacillus sp. L4]
MKKRYLAIALVALSLLSLFVGVTRISPMDLLDFTSQKTQIFLISRIPRLIAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGILISMIVFTNATYMQKLTFAFIFALAGTLLFMQILNRIKFKDAIFIPLVGLMFGNILSSITTFFAYKSNIV
QNITVWLQGDFSLILKGRYELLYISVPVLIIAYFYANRFTVAGMGEDFAKNLGLSYKRVMNLGLVLVALISTTVVLTVGM
IPFLGLIIPNIVSIFKGDHLEKTLPHTALLGVIFLLICDILGRVLIFPYEIPISMTVGVIGSAIFLFLLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1044277 ACEPXG_RS16925 WP_391204956.1 3511668..3512618(-) (ceuB) [Psychrobacillus sp. L4]
ATGAAAAAAAGATATCTTGCAATTGCATTAGTCGCGCTTTCTCTCTTATCTCTTTTTGTTGGTGTTACGAGAATTTCACC
AATGGATTTGTTAGATTTTACTTCGCAAAAGACGCAAATATTTTTGATTAGCCGTATACCGAGACTTATCGCCATTATTC
TTGCAGGAGCAGGGATGAGTATTGCAGGGTTAATCATGCAGAGTTTAAGTAGAAATAAGTTCGTATCTCCAACAACGGCA
GGAACGCTAGATGCTACTCGCTTAGGAATATTAATCTCGATGATCGTATTTACAAATGCGACCTATATGCAGAAGCTCAC
TTTTGCATTTATCTTCGCTTTAGCTGGTACATTGCTGTTTATGCAAATACTTAATCGAATAAAGTTTAAAGATGCCATCT
TTATTCCACTTGTTGGTCTAATGTTCGGAAACATTTTGTCTTCGATTACCACGTTTTTTGCTTACAAATCAAACATTGTT
CAAAATATTACTGTCTGGCTACAAGGGGACTTTTCCTTGATCTTGAAAGGCAGATATGAATTATTGTACATAAGTGTACC
TGTATTAATAATTGCCTATTTTTATGCTAATCGTTTTACTGTTGCTGGGATGGGTGAGGATTTTGCAAAAAATCTCGGTT
TATCTTACAAAAGAGTTATGAACTTAGGTTTGGTATTAGTCGCTTTAATCTCGACTACGGTTGTCTTAACAGTTGGAATG
ATTCCATTTTTAGGTTTAATCATTCCGAATATTGTATCTATATTTAAAGGCGATCATTTAGAAAAGACATTACCACATAC
GGCATTGCTTGGAGTTATATTCTTGTTGATATGCGACATTTTAGGGCGGGTGTTAATTTTCCCTTACGAAATTCCGATTA
GTATGACAGTTGGTGTAATCGGAAGCGCCATCTTCCTATTCTTATTGTTTAGGGGGAAAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.298

95.57

0.528

Multiple sequence alignment