Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ACEPXG_RS10305 Genome accession   NZ_CP168496
Coordinates   2145351..2147054 (-) Length   567 a.a.
NCBI ID   WP_391201773.1    Uniprot ID   -
Organism   Psychrobacillus sp. L4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2140351..2152054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXG_RS10285 (ACEPXG_10285) - 2140641..2141357 (-) 717 WP_391201762.1 glycerophosphodiester phosphodiesterase -
  ACEPXG_RS10290 (ACEPXG_10290) - 2141350..2142921 (-) 1572 WP_391201765.1 DUF342 domain-containing protein -
  ACEPXG_RS10295 (ACEPXG_10295) spo0A 2143263..2144054 (-) 792 WP_391201768.1 sporulation transcription factor Spo0A -
  ACEPXG_RS10300 (ACEPXG_10300) - 2144297..2145256 (-) 960 WP_391201771.1 SpoIVB peptidase S55 domain-containing protein -
  ACEPXG_RS10305 (ACEPXG_10305) recN 2145351..2147054 (-) 1704 WP_391201773.1 DNA repair protein RecN Machinery gene
  ACEPXG_RS10310 (ACEPXG_10310) ahrC 2147126..2147575 (-) 450 WP_391201776.1 transcriptional regulator AhrC/ArgR -
  ACEPXG_RS10315 (ACEPXG_10315) - 2147674..2148492 (-) 819 WP_391201778.1 TlyA family RNA methyltransferase -
  ACEPXG_RS10320 (ACEPXG_10320) dxs 2148489..2150384 (-) 1896 WP_391201781.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ACEPXG_RS10325 (ACEPXG_10325) - 2150474..2151358 (-) 885 WP_391201784.1 polyprenyl synthetase family protein -
  ACEPXG_RS10330 (ACEPXG_10330) xseB 2151351..2151572 (-) 222 WP_151700317.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64074.04 Da        Isoelectric Point: 5.0456

>NTDB_id=1044267 ACEPXG_RS10305 WP_391201773.1 2145351..2147054(-) (recN) [Psychrobacillus sp. L4]
MLKELSIKNFAIIDELTVSFEEGLTVLTGETGAGKSIIIDAVHLLCGGRGSQEFIRHGAKKAELEGLFIITNPKHGVFHK
MLDVGVEIDEESIILRRDINDSGKSVCRVNGKLVTLGILREIGASIIDIHGQHESQELMDEKVHIHLLDQFAGEKIRSVK
ESYKELFAKYKKWKKDLATLTENEQQIAHKIDLYTFQVEEINDANLVNGEEEQLQEEKKKLQNFHKVFDKMSSAYEAILS
ESKGLDYIGTAMADLQDISDVDKNMLELSENVSSAFYILQDAAYQLKNELDEMEFDSNQLQYVEDRLACIQTLKRKYGQS
IEAILEYKEQISKSLEQLVNRDEQIQKTADKIKQIEKDLELEANDLTDKRKNAAKQLSKAIMEQLQELYMEKATFSVMFH
EHSKITYNEYGIDEISFYISTNVGEPPKALTKIASGGELSRMMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
SGIATNSQVLCISHLPQVAAMADQHLLIKKEVSGNRTYTILEEAFDDRRAEELSRMMSGAEITSTTLQHSKELLKLAEER
KKILRNA

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=1044267 ACEPXG_RS10305 WP_391201773.1 2145351..2147054(-) (recN) [Psychrobacillus sp. L4]
TTGTTAAAAGAGTTATCAATTAAAAACTTTGCCATTATTGATGAATTAACAGTAAGCTTTGAGGAAGGCCTTACTGTATT
AACTGGAGAGACAGGTGCAGGTAAATCAATCATAATTGATGCTGTTCATTTGTTGTGTGGAGGAAGAGGCTCTCAAGAGT
TTATTCGCCATGGTGCGAAAAAAGCAGAATTAGAAGGATTATTCATTATCACGAATCCAAAACATGGTGTTTTTCATAAA
ATGCTAGATGTTGGTGTTGAAATAGACGAGGAATCTATTATTTTAAGAAGAGATATTAATGATTCAGGGAAGAGTGTATG
TCGCGTAAACGGAAAACTAGTTACGCTTGGTATATTACGAGAAATTGGGGCCTCTATTATTGATATCCATGGGCAGCACG
AGAGCCAAGAACTAATGGATGAAAAGGTACATATTCATTTGCTTGATCAGTTTGCAGGAGAAAAGATAAGAAGCGTAAAA
GAGTCTTATAAAGAGCTCTTCGCCAAATATAAAAAGTGGAAAAAAGATTTAGCTACTTTAACGGAAAATGAGCAACAAAT
TGCACATAAAATAGATTTGTATACATTTCAAGTGGAAGAAATAAATGATGCAAATTTAGTGAATGGAGAAGAAGAACAAC
TTCAAGAAGAAAAAAAGAAGCTTCAAAATTTCCATAAGGTCTTTGATAAAATGAGCAGTGCATACGAGGCAATCTTATCT
GAATCGAAAGGCCTCGACTACATCGGCACTGCAATGGCAGATTTGCAAGATATCTCTGACGTAGATAAGAATATGCTGGA
GTTAAGCGAAAATGTTTCGTCCGCGTTTTATATTTTGCAAGATGCTGCATATCAGTTAAAAAATGAATTAGATGAAATGG
AATTCGATAGTAATCAGCTTCAATATGTCGAAGACCGTCTTGCATGCATTCAGACACTAAAGAGAAAATATGGACAGTCT
ATCGAAGCCATTTTGGAATACAAAGAGCAAATTTCCAAAAGTCTCGAGCAACTAGTTAATCGAGATGAGCAAATTCAAAA
AACAGCAGATAAGATTAAGCAAATCGAGAAAGATTTAGAACTTGAAGCAAATGATTTAACGGATAAACGAAAAAATGCTG
CCAAACAATTAAGTAAAGCAATTATGGAGCAATTACAAGAGCTATACATGGAAAAAGCAACTTTTTCTGTTATGTTCCAT
GAGCATTCTAAAATAACTTATAACGAGTATGGGATTGACGAAATATCATTTTATATTTCAACGAATGTGGGGGAACCACC
AAAAGCCTTAACAAAAATTGCATCAGGTGGTGAGTTATCTCGAATGATGCTTGCTTTAAAAAGTATTTTCTCAAAGCATC
AAGGGATAACATCGATCATATTTGATGAAGTTGATACTGGTGTTAGTGGACGAGTAGCTCAAGCGATAGCCGAAAAAATA
TCCGGAATTGCTACTAATTCACAAGTTTTATGTATATCACATCTTCCGCAGGTAGCTGCAATGGCAGACCAACATTTACT
GATTAAAAAAGAAGTATCGGGAAATAGAACATACACCATTTTAGAAGAAGCGTTCGATGATCGACGAGCCGAAGAGTTAA
GCCGTATGATGTCAGGTGCTGAAATTACAAGTACTACATTGCAACATTCAAAAGAACTGCTAAAATTAGCGGAAGAACGA
AAAAAAATATTACGAAATGCTTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.613

100

0.533

Multiple sequence alignment