Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ACEPXD_RS19105 Genome accession   NZ_CP168493
Coordinates   3797837..3799207 (-) Length   456 a.a.
NCBI ID   WP_391118508.1    Uniprot ID   -
Organism   Psychrobacillus sp. L3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3792837..3804207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXD_RS19085 (ACEPXD_19085) gltX 3793842..3795305 (-) 1464 WP_391118500.1 glutamate--tRNA ligase -
  ACEPXD_RS19090 (ACEPXD_19090) ispF 3795376..3795855 (-) 480 WP_391118502.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACEPXD_RS19095 (ACEPXD_19095) ispD 3795869..3796546 (-) 678 WP_391118504.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  ACEPXD_RS19100 (ACEPXD_19100) - 3796622..3797710 (-) 1089 WP_391118506.1 PIN/TRAM domain-containing protein -
  ACEPXD_RS19105 (ACEPXD_19105) radA 3797837..3799207 (-) 1371 WP_391118508.1 DNA repair protein RadA Machinery gene
  ACEPXD_RS19110 (ACEPXD_19110) - 3799266..3801713 (-) 2448 WP_391118510.1 ATP-dependent Clp protease ATP-binding subunit -
  ACEPXD_RS19115 (ACEPXD_19115) - 3801710..3802804 (-) 1095 WP_391123390.1 protein arginine kinase -
  ACEPXD_RS19120 (ACEPXD_19120) - 3802794..3803339 (-) 546 WP_391118512.1 UvrB/UvrC motif-containing protein -
  ACEPXD_RS19125 (ACEPXD_19125) - 3803361..3803828 (-) 468 WP_151701765.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50103.73 Da        Isoelectric Point: 6.6968

>NTDB_id=1044241 ACEPXD_RS19105 WP_391118508.1 3797837..3799207(-) (radA) [Psychrobacillus sp. L3]
MAKRKTKFMCNSCGYESAKWMGRCPGCGEWNTMVEELEVVSKGPKRSFQHSSGVAQKATPIIAVETADEPRVETELMEFN
RVLGGGIVPGSLILIGGDPGIGKSTLLLQVSALLANKGERVLYISGEESIRQTKLRAERLGVTSAELYIYSETNLELINE
TIDSVEPRFVVVDSIQTVHHPEVTSAPGSVSQVRECTAELMRIAKTKNIAIFLVGHVTKEGQIAGPRLLEHMVDTVLYFE
GERHHTYRILRSQKNRFGSTNEIAIFEMVQQGLKEVLNPSELFLQERSHGAAGSAIVASMEGTRPILVEIQALVTQSSFN
YPKRMATGIDQNRISLLMAVLEKRMGLLLQTQDAYIKVAGGVKLDEPAIDLAVLVSIVSSFRDTGVTPTDCFVGEVGLTG
EVRRVSRIEQRVQEATKLGFKRIVIPASNLGGWDYPKGIQVIGVETVNEVMKEAFQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1044241 ACEPXD_RS19105 WP_391118508.1 3797837..3799207(-) (radA) [Psychrobacillus sp. L3]
ATGGCGAAACGAAAAACGAAGTTTATGTGTAATTCTTGCGGTTATGAGTCTGCCAAATGGATGGGAAGATGTCCAGGATG
CGGAGAATGGAATACAATGGTAGAAGAGTTGGAGGTTGTTTCAAAAGGACCAAAACGATCTTTTCAACATTCTTCTGGAG
TAGCCCAGAAAGCCACGCCAATTATTGCTGTGGAGACAGCGGATGAACCGAGAGTAGAAACGGAACTCATGGAGTTCAAT
CGAGTACTTGGCGGTGGAATTGTGCCTGGTTCCCTTATTTTAATAGGTGGAGATCCGGGAATCGGAAAGTCAACTTTGCT
TTTACAAGTTTCTGCATTACTTGCAAACAAAGGAGAACGCGTTTTATATATTTCCGGTGAGGAATCGATTAGACAGACGA
AGCTTCGCGCCGAGCGTTTGGGTGTCACATCAGCTGAACTGTATATATATTCCGAAACGAATTTAGAATTAATCAATGAA
ACAATTGATAGTGTAGAGCCTAGATTTGTCGTTGTCGACTCTATTCAAACCGTACATCATCCGGAAGTGACAAGTGCTCC
AGGAAGTGTGTCTCAAGTGCGAGAATGTACAGCTGAACTAATGCGCATTGCTAAAACAAAAAATATAGCAATTTTCTTAG
TAGGGCATGTAACGAAAGAGGGGCAAATTGCTGGACCACGTTTATTAGAGCATATGGTAGATACTGTTTTATATTTTGAA
GGAGAACGACATCATACATACCGGATTTTACGGTCACAAAAAAATAGATTTGGTTCGACGAATGAAATTGCCATTTTTGA
GATGGTGCAGCAAGGTTTAAAAGAAGTGTTGAATCCATCTGAATTATTTTTGCAAGAGCGTTCACACGGAGCAGCTGGCT
CAGCCATTGTTGCTTCGATGGAAGGGACAAGACCTATCTTGGTTGAAATTCAAGCACTTGTTACTCAATCTAGTTTTAAT
TATCCAAAACGAATGGCAACAGGAATCGATCAAAATAGAATTTCTTTACTCATGGCTGTATTAGAAAAACGTATGGGATT
ACTATTGCAAACGCAAGATGCTTATATAAAAGTTGCGGGTGGAGTTAAATTAGACGAACCTGCGATTGATTTAGCCGTCC
TAGTAAGTATCGTATCCAGTTTCCGGGACACAGGAGTAACACCTACCGATTGTTTTGTGGGAGAGGTTGGACTAACTGGC
GAAGTTAGACGAGTATCGAGAATTGAGCAAAGAGTGCAAGAGGCGACCAAATTAGGTTTTAAACGTATCGTGATTCCTGC
ATCTAATTTAGGTGGCTGGGATTATCCAAAAGGTATTCAAGTAATTGGGGTAGAAACTGTAAATGAAGTCATGAAAGAAG
CTTTTCAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(72-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

71.616

100

0.719
  radA Streptococcus pneumoniae Rx1

62.857

99.781

0.627
  radA Streptococcus pneumoniae D39

62.857

99.781

0.627
  radA Streptococcus pneumoniae R6

62.857

99.781

0.627
  radA Streptococcus pneumoniae TIGR4

62.857

99.781

0.627
  radA Streptococcus mitis NCTC 12261

62.857

99.781

0.627
  radA Streptococcus mitis SK321

62.637

99.781

0.625

Multiple sequence alignment