Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ACEPXD_RS17485 Genome accession   NZ_CP168493
Coordinates   3498833..3499783 (-) Length   316 a.a.
NCBI ID   WP_151701451.1    Uniprot ID   -
Organism   Psychrobacillus sp. L3     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3493833..3504783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPXD_RS17460 (ACEPXD_17460) - 3494635..3495249 (-) 615 WP_391123345.1 uracil-DNA glycosylase -
  ACEPXD_RS17465 (ACEPXD_17465) - 3495334..3495945 (-) 612 WP_391117978.1 phosphatase PAP2 family protein -
  ACEPXD_RS17470 (ACEPXD_17470) - 3496114..3497109 (-) 996 WP_391117980.1 siderophore ABC transporter substrate-binding protein -
  ACEPXD_RS17475 (ACEPXD_17475) - 3497129..3497890 (-) 762 WP_391117982.1 ABC transporter ATP-binding protein -
  ACEPXD_RS17480 (ACEPXD_17480) - 3497887..3498840 (-) 954 WP_391117984.1 iron chelate uptake ABC transporter family permease subunit -
  ACEPXD_RS17485 (ACEPXD_17485) ceuB 3498833..3499783 (-) 951 WP_151701451.1 ABC transporter permease Machinery gene
  ACEPXD_RS17490 (ACEPXD_17490) - 3500043..3500885 (-) 843 WP_391117986.1 DUF6612 family protein -
  ACEPXD_RS17495 (ACEPXD_17495) - 3500959..3502446 (-) 1488 WP_391117988.1 peptide MFS transporter -
  ACEPXD_RS17500 (ACEPXD_17500) - 3502612..3504330 (+) 1719 WP_391117990.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34812.16 Da        Isoelectric Point: 10.4482

>NTDB_id=1044240 ACEPXD_RS17485 WP_151701451.1 3498833..3499783(-) (ceuB) [Psychrobacillus sp. L3]
MKKRYLVIALVALSLLSLFVGVTRISPIDLLDFTSQNTQIFLISRIPRLIAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDATRLGILISMIVFTNATYMQKLTFAFIFALAGTLLFMQILNRIKFKDAIFIPLVGLMFGNILSSITTFFAYKSNIV
QNITVWLQGDFSLILKGRYELLYISVPVLIIAYFYANRFTVAGMGEDFAKNLGLSYKRVMNLGLVLVALISTTVVLTVGM
IPFLGLIIPNIVSIFKGDHLEKTLPHTALLGVIFLLVCDILGRVLIFPYEIPISMTVGVIGSAIFLFLLFRGKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1044240 ACEPXD_RS17485 WP_151701451.1 3498833..3499783(-) (ceuB) [Psychrobacillus sp. L3]
ATGAAAAAAAGATATCTTGTAATTGCACTAGTCGCGCTTTCTCTCTTATCTCTTTTTGTTGGTGTTACGAGAATTTCACC
AATTGATTTGTTAGATTTTACATCTCAAAATACGCAAATATTTCTGATTAGCCGTATACCAAGGCTTATCGCCATCATAC
TTGCAGGAGCAGGGATGAGTATTGCAGGGTTAATCATGCAGAGTTTAAGTAGAAATAAGTTCGTATCTCCAACAACGGCA
GGAACGCTAGATGCTACTCGTTTAGGAATATTAATCTCGATGATCGTATTTACAAATGCGACCTATATGCAGAAGCTCAC
TTTTGCATTTATCTTCGCTTTAGCTGGTACATTGCTGTTTATGCAAATACTTAATCGAATAAAGTTTAAAGATGCCATCT
TTATTCCACTTGTTGGTCTAATGTTCGGAAATATTTTGTCTTCGATTACCACGTTTTTTGCTTACAAATCAAACATTGTT
CAAAATATTACTGTCTGGCTACAAGGGGACTTTTCCTTAATCTTGAAAGGCAGATATGAATTATTGTACATAAGTGTACC
TGTATTAATAATTGCCTATTTTTATGCTAATCGTTTTACTGTTGCTGGGATGGGTGAGGATTTTGCAAAAAATCTCGGTT
TATCTTACAAAAGAGTTATGAACTTAGGTTTGGTATTAGTCGCTTTAATCTCAACTACGGTTGTTCTAACAGTTGGGATG
ATCCCGTTTTTAGGTTTAATCATTCCTAATATTGTATCGATATTTAAAGGGGATCATTTAGAAAAAACACTTCCACATAC
GGCATTGCTTGGAGTCATATTCTTGTTGGTATGTGACATTTTAGGGCGGGTGTTAATTTTCCCTTACGAAATTCCGATTA
GCATGACAGTTGGTGTGATCGGAAGTGCCATCTTCCTATTCTTATTGTTTAGGGGGAAAGCATATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

54.313

99.051

0.538

Multiple sequence alignment