Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   R8965_RS07505 Genome accession   NZ_AP028338
Coordinates   1401785..1402753 (+) Length   322 a.a.
NCBI ID   WP_002829485.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10307     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1396785..1407753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8965_RS07480 (B10307_14800) - 1397641..1398366 (-) 726 WP_002780542.1 phosphatidate cytidylyltransferase -
  R8965_RS07485 (B10307_14810) - 1398375..1398713 (-) 339 WP_002777761.1 hypothetical protein -
  R8965_RS07490 (B10307_14820) - 1398715..1400022 (-) 1308 WP_002822032.1 NFACT family protein -
  R8965_RS07495 (B10307_14830) - 1400085..1400660 (+) 576 WP_002780540.1 molybdenum cofactor guanylyltransferase -
  R8965_RS07500 (B10307_14840) - 1400759..1401652 (+) 894 WP_079749675.1 phospholipase A -
  R8965_RS07505 (B10307_14850) ceuB 1401785..1402753 (+) 969 WP_002829485.1 ABC transporter permease Machinery gene
  R8965_RS07510 (B10307_14860) - 1402746..1403684 (+) 939 WP_002777770.1 iron chelate uptake ABC transporter family permease subunit -
  R8965_RS07515 (B10307_14870) - 1403681..1404436 (+) 756 WP_317727874.1 ABC transporter ATP-binding protein -
  R8965_RS07520 (B10307_14880) - 1404451..1405440 (+) 990 WP_002777774.1 siderophore ABC transporter substrate-binding protein -
  R8965_RS07525 (B10307_14890) - 1405606..1406238 (+) 633 WP_002777778.1 membrane protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35463.34 Da        Isoelectric Point: 9.5069

>NTDB_id=104416 R8965_RS07505 WP_002829485.1 1401785..1402753(+) (ceuB) [Campylobacter coli strain BCH-10307]
MLFKHLFSLNILLILLVVFGMISLFIGVIRINLDDIFSLSATQLEIILLTRIPRLIAILLTGMSLSICGLIMQQLTQNKF
VSPTTAGTMDCAKFGILISLIFFAGASFFAQALIASIFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIINAITTFFA
YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIAGMGEDLALNLGVSYNTILFLGLIIVSIITSVV
IVSIGVIPFLGLIIPNLVAIYRGDNLKKNLIYIALCGALFLLICDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKT
YA

Nucleotide


Download         Length: 969 bp        

>NTDB_id=104416 R8965_RS07505 WP_002829485.1 1401785..1402753(+) (ceuB) [Campylobacter coli strain BCH-10307]
TTGCTTTTTAAACACTTGTTTAGTTTAAATATTCTTTTAATTTTACTTGTTGTTTTTGGAATGATAAGCTTATTTATAGG
GGTTATTCGTATCAATTTAGACGATATTTTTTCACTCAGCGCTACCCAGCTTGAAATCATTTTACTTACAAGAATTCCAA
GGCTTATTGCAATTTTACTTACAGGTATGAGTCTTAGTATATGCGGACTCATCATGCAACAACTCACGCAAAATAAATTT
GTTTCCCCAACTACCGCAGGGACTATGGATTGTGCTAAATTTGGCATTTTGATTTCTTTAATATTTTTTGCAGGAGCTTC
TTTTTTTGCTCAAGCTCTCATCGCATCTATTTTTGCTCTTTTAGGTTCTTTTATATTTATCCAAATTCTAAGAAAAATTA
AACTTAAAGATGTGATTTTTGTGCCTTTGATAGGCTTAATGTTTGGTGGGATTATAAATGCTATAACCACTTTTTTTGCT
TATGCTTTAAATTATATACAAAATATCCAAGGCTGGCTACAGGGCAGTATGGCAAATGTTATGCAGGGAAATTATGAATT
GCTTTATATTTCTTTACCGCTTTTTATACTTGCTTATTTTCTAGCCCATAAAATCACTATAGCAGGTATGGGAGAAGATC
TTGCTTTAAATCTTGGAGTTTCTTATAATACAATCTTATTTTTAGGCTTAATAATAGTTTCTATTATCACTAGCGTAGTG
ATTGTAAGCATTGGAGTTATACCTTTTTTAGGTCTTATCATCCCTAATCTTGTTGCCATTTATCGCGGGGATAATCTTAA
GAAAAATCTTATCTATATAGCATTATGCGGGGCTTTGTTTTTACTTATTTGCGATATTATCTCAAGACTTGTGATTTTTC
CTTTTGAAATGCCTTTGAGTATAACCACAGGTGTTTTGGGCTCTTTAATTTTTATTTTTCTTTTACTCAAAAGGAAAACT
TATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(15-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

89.441

100

0.894

Multiple sequence alignment