Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   QOR54_RS05455 Genome accession   NZ_OX460968
Coordinates   1034837..1035799 (-) Length   320 a.a.
NCBI ID   WP_000735584.1    Uniprot ID   -
Organism   Streptococcus agalactiae isolate MRI Z2-342     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1029837..1040799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QOR54_RS05435 dprA 1031038..1031880 (-) 843 WP_001015250.1 DNA-processing protein DprA Machinery gene
  QOR54_RS05440 - 1032018..1033046 (-) 1029 WP_000162771.1 siderophore ABC transporter substrate-binding protein -
  QOR54_RS05445 - 1033108..1033869 (-) 762 WP_000614752.1 ATP-binding cassette domain-containing protein -
  QOR54_RS05450 - 1033866..1034840 (-) 975 WP_000588585.1 iron chelate uptake ABC transporter family permease subunit -
  QOR54_RS05455 ceuB 1034837..1035799 (-) 963 WP_000735584.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  QOR54_RS05460 - 1036038..1036586 (-) 549 WP_000136503.1 sugar O-acetyltransferase -
  QOR54_RS05465 - 1036607..1037368 (-) 762 WP_000201090.1 ribonuclease HII -
  QOR54_RS05470 ylqF 1037355..1038206 (-) 852 WP_000201279.1 ribosome biogenesis GTPase YlqF -
  QOR54_RS05475 - 1038297..1039805 (-) 1509 WP_017285392.1 tyrosine-type recombinase/integrase -
  QOR54_RS05480 - 1039880..1040113 (-) 234 WP_000693749.1 hypothetical protein -
  QOR54_RS05485 - 1040382..1040603 (-) 222 WP_283571731.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 320 a.a.        Molecular weight: 34893.03 Da        Isoelectric Point: 8.4842

>NTDB_id=1044103 QOR54_RS05455 WP_000735584.1 1034837..1035799(-) (ceuB) [Streptococcus agalactiae isolate MRI Z2-342]
MKKLLTTPVMGCTLVILSLTSLFVGVKSIPLEQITHLDQSQVDIFLASRLPRTISILISGASLSVCGLLMQQLTQNKFVS
PTTSGTMDWAKLGVVVTLIFFKNTSIFIQLCIASGFAILGSLLFVTILKMITFKDNIFIPLIGLMLGQIVAAVTVFLGTH
FQVLQSVNSWLQGNFSIMTSHRYEILYLALPCLFLVYFFAHQFTIVGLGESFAKNLGIAYEKMIYFGLVLVSIMTSLVII
IVGALPFLGLIVPNLISITKGDHMSSTILETSLLGACIVMICDLFGRLVIFPYEVSIGVTLGVLGSAFFLISIIRNEGKS

Nucleotide


Download         Length: 963 bp        

>NTDB_id=1044103 QOR54_RS05455 WP_000735584.1 1034837..1035799(-) (ceuB) [Streptococcus agalactiae isolate MRI Z2-342]
ATGAAAAAGCTATTAACCACTCCTGTAATGGGTTGTACTTTGGTTATACTTTCTCTAACGTCCCTATTTGTTGGTGTTAA
ATCTATCCCACTGGAGCAAATAACACACCTTGATCAATCACAGGTAGATATTTTTTTAGCGAGTCGCTTACCAAGAACCA
TTAGTATCCTAATATCTGGTGCAAGTTTGTCAGTCTGTGGCCTGCTGATGCAACAACTCACCCAAAACAAGTTCGTTTCA
CCGACAACTTCAGGGACTATGGATTGGGCGAAATTAGGAGTAGTTGTTACGCTGATTTTCTTTAAAAATACCTCTATTTT
TATTCAACTATGTATAGCTTCAGGTTTTGCCATTTTAGGATCGCTTCTTTTTGTAACCATTTTAAAAATGATTACTTTTA
AGGATAATATTTTTATACCTCTTATCGGACTGATGCTTGGACAAATTGTAGCAGCAGTAACAGTATTTTTAGGAACACAT
TTTCAAGTACTACAATCTGTCAACAGTTGGCTTCAAGGTAATTTTTCCATCATGACTAGCCATCGCTACGAAATTCTTTA
CTTAGCATTGCCATGTTTGTTTTTAGTGTATTTTTTTGCTCATCAGTTTACCATTGTTGGGCTTGGAGAAAGCTTCGCTA
AAAATTTAGGGATTGCTTATGAAAAGATGATTTACTTTGGTTTAGTTTTGGTTTCAATTATGACATCCCTAGTCATTATT
ATCGTAGGAGCTTTACCTTTCTTAGGTTTAATCGTACCTAATCTAATTAGCATAACTAAAGGAGATCATATGTCCTCAAC
TATCTTAGAGACATCGCTTTTAGGGGCTTGTATCGTCATGATATGTGATCTTTTTGGTCGCTTAGTTATTTTTCCTTATG
AAGTCTCAATAGGAGTTACGCTAGGAGTATTGGGTAGTGCCTTTTTCTTGATTTCAATTATAAGAAATGAGGGAAAATCA
TGA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(14-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.962

99.688

0.478