Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ABZM74_RS07345 Genome accession   NZ_CP168413
Coordinates   1508458..1510266 (-) Length   602 a.a.
NCBI ID   WP_003610154.1    Uniprot ID   A0A4Z0RUY2
Organism   Weissella confusa strain SY628     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1503458..1515266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZM74_RS07315 (ABZM74_001493) - 1503469..1503864 (+) 396 WP_056972929.1 hypothetical protein -
  ABZM74_RS07320 (ABZM74_001494) - 1503912..1505012 (-) 1101 WP_164698654.1 Xaa-Pro peptidase family protein -
  ABZM74_RS07325 (ABZM74_001495) ccpA 1505257..1506261 (+) 1005 WP_003610147.1 catabolite control protein A -
  ABZM74_RS07330 (ABZM74_001496) - 1506314..1506943 (-) 630 WP_056972931.1 hypothetical protein -
  ABZM74_RS07335 (ABZM74_001497) - 1506972..1507361 (-) 390 WP_003610152.1 DUF948 domain-containing protein -
  ABZM74_RS07340 (ABZM74_001498) - 1507672..1508391 (+) 720 WP_056972933.1 MIP/aquaporin family protein -
  ABZM74_RS07345 (ABZM74_001499) pepF 1508458..1510266 (-) 1809 WP_003610154.1 oligoendopeptidase F Regulator
  ABZM74_RS07350 (ABZM74_001500) - 1510347..1511357 (-) 1011 WP_056972934.1 competence protein CoiA -
  ABZM74_RS07355 (ABZM74_001501) - 1511475..1512836 (-) 1362 WP_003610156.1 PTS sugar transporter subunit IIC -
  ABZM74_RS07360 (ABZM74_001502) - 1512911..1514362 (-) 1452 WP_003610159.1 6-phospho-beta-glucosidase -
  ABZM74_RS07365 (ABZM74_001503) - 1514362..1514688 (-) 327 WP_003610161.1 PTS lactose/cellobiose transporter subunit IIA -
  ABZM74_RS07370 (ABZM74_001504) - 1514772..1515089 (-) 318 WP_003610163.1 PTS sugar transporter subunit IIB -

Sequence

Protein


Download         Length: 602 a.a.        Molecular weight: 68009.65 Da        Isoelectric Point: 4.1783

>NTDB_id=1044012 ABZM74_RS07345 WP_003610154.1 1508458..1510266(-) (pepF) [Weissella confusa strain SY628]
MAKELPLREELPESMTWDLSTIFASDEAWEDAFADLEDRLESAEFFAASVTNSATDLYNALQYGLGLMQDLEKLYVYASM
KSDQDTANTYYQGLNNMAESLAARVSAAIAFFDPAVLSLSEEELSEFFAAEPKLQDYKHYFDSILTQQGHVLPTEQESLL
AAAGDVFGASQRTFGVLDNADISFEAVENENGEMETLSNGVYSRLLESTNPEIRKNAFQTFYKSYMALENTFASLIGNHV
KGQNFMAAAHHYDNAREAALAGNHVPEVVYDTLVAEVNKALPLLHRYVGLRKKLLGLDELHSYDLYTPILGEPDYDIDYE
SAKAEALQALAPLGDDYLDIVNKAFDSRWIDVIENKGKRSGAYSGGSYDTNPFILLNWVDNLNNLSTLVHEMGHSVHSYY
TRQNQPYHYGDYPIFLAEIASTTNENLLTDYLLKTVDDKKLRAYILNQYLDGVKGTVFRQTQFAEFEQWMHVTDAEGTPL
TADVLDEAYGEMNRRYYGPELTFDEEIAHEWERIPHFYYNFYVFQYATGFAAATAMADKILTEGEPAVAAYKEYLQAGSS
AFPIDVMKKAGLDMTKPDYLQDTFKVFEERLNEFEALVNELA

Nucleotide


Download         Length: 1809 bp        

>NTDB_id=1044012 ABZM74_RS07345 WP_003610154.1 1508458..1510266(-) (pepF) [Weissella confusa strain SY628]
ATGGCAAAAGAATTACCATTGCGCGAAGAGTTGCCTGAGTCAATGACTTGGGATCTATCAACCATCTTTGCCTCTGACGA
AGCGTGGGAAGATGCCTTCGCGGATTTGGAAGACCGTCTTGAATCAGCTGAGTTCTTTGCAGCAAGTGTGACGAATTCTG
CAACGGATTTGTACAACGCTTTGCAATACGGCCTAGGCTTGATGCAAGATTTGGAAAAGTTGTATGTATATGCCTCAATG
AAGTCTGATCAAGACACGGCTAACACTTACTACCAAGGTTTGAACAACATGGCCGAGTCTTTGGCTGCTCGTGTGTCAGC
TGCGATTGCCTTCTTTGACCCAGCCGTTTTGAGCTTGTCAGAAGAAGAGTTGTCAGAATTCTTTGCAGCTGAGCCTAAGC
TACAAGACTACAAGCACTACTTTGATAGCATTTTGACGCAACAAGGTCACGTCTTGCCAACTGAGCAAGAGTCACTTTTG
GCAGCCGCGGGTGATGTCTTTGGGGCATCACAACGTACATTTGGTGTGTTGGACAACGCTGATATTTCATTTGAAGCCGT
TGAAAATGAAAACGGTGAAATGGAAACGTTGTCTAATGGTGTTTACTCACGTTTGTTGGAGTCAACGAATCCTGAAATCC
GCAAGAATGCTTTCCAAACGTTCTACAAGTCATACATGGCTTTGGAGAACACGTTTGCCTCATTGATTGGTAACCATGTT
AAGGGACAAAACTTTATGGCGGCTGCGCACCACTACGACAATGCGCGTGAAGCTGCGTTGGCTGGTAACCACGTGCCTGA
AGTTGTTTACGATACGTTGGTTGCGGAAGTGAACAAGGCATTGCCATTGCTCCACCGTTATGTTGGTTTGCGTAAGAAGT
TGTTAGGCTTGGATGAGTTGCACTCATATGATCTTTACACGCCAATTTTGGGTGAACCAGATTATGATATCGATTATGAA
TCAGCCAAGGCTGAAGCATTGCAGGCGTTGGCACCTTTGGGGGATGATTATCTTGATATCGTGAACAAGGCCTTTGATAG
TCGTTGGATTGATGTCATTGAAAACAAGGGTAAGCGTTCAGGTGCTTATTCAGGTGGATCATATGACACAAACCCATTCA
TTTTGTTGAACTGGGTGGATAACTTGAATAACTTGAGCACGCTGGTTCACGAAATGGGTCACTCAGTGCACTCATATTAC
ACGCGTCAAAACCAACCATATCACTATGGTGACTACCCAATTTTCTTGGCTGAGATTGCCTCAACGACGAACGAGAACTT
GTTGACGGATTACTTGTTGAAGACGGTTGATGACAAGAAGCTCCGTGCTTATATCTTGAACCAATACTTGGATGGCGTTA
AGGGCACGGTCTTCCGTCAAACGCAATTTGCTGAATTTGAGCAATGGATGCACGTAACGGATGCTGAGGGTACGCCTTTG
ACGGCTGACGTTTTGGATGAAGCGTATGGTGAGATGAACCGTCGTTACTATGGTCCAGAATTGACGTTTGATGAAGAAAT
CGCGCACGAATGGGAGCGTATTCCACACTTCTACTACAACTTCTACGTCTTCCAATATGCAACAGGCTTTGCAGCTGCAA
CCGCAATGGCAGACAAGATTTTGACTGAAGGTGAGCCGGCCGTGGCAGCTTACAAGGAATACTTGCAAGCTGGTTCATCA
GCATTCCCAATTGATGTGATGAAGAAGGCTGGTTTGGATATGACCAAGCCAGACTACCTACAAGACACATTCAAGGTCTT
CGAGGAACGTTTGAACGAGTTCGAAGCACTTGTTAACGAATTGGCCTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(117-184)

Peptidase family M3 (Peptidase_M3)

(205-585)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Z0RUY2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

53.638

98.173

0.527

Multiple sequence alignment