Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   ACD268_RS09610 Genome accession   NZ_CP168299
Coordinates   1881270..1882307 (-) Length   345 a.a.
NCBI ID   WP_000727284.1    Uniprot ID   A0A380LR41
Organism   Streptococcus pneumoniae strain FC1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1876270..1887307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACD268_RS09585 (ACD268_09585) - 1877009..1878340 (-) 1332 WP_000390042.1 hemolysin family protein -
  ACD268_RS09590 (ACD268_09590) endA 1878631..1879455 (-) 825 WP_001036791.1 DNA-entry nuclease EndA Machinery gene
  ACD268_RS09595 (ACD268_09595) - 1879494..1879682 (-) 189 WP_001036519.1 DNA-directed RNA polymerase subunit beta -
  ACD268_RS09600 (ACD268_09600) murA 1879675..1880958 (-) 1284 WP_000358032.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ACD268_RS09605 (ACD268_09605) - 1880982..1881212 (-) 231 WP_000250390.1 DUF1146 family protein -
  ACD268_RS09610 (ACD268_09610) sepM 1881270..1882307 (-) 1038 WP_000727284.1 SepM family pheromone-processing serine protease Regulator
  ACD268_RS09615 (ACD268_09615) coaD 1882291..1882779 (-) 489 WP_001280746.1 pantetheine-phosphate adenylyltransferase -
  ACD268_RS09620 (ACD268_09620) rsmD 1882769..1883308 (-) 540 WP_000706963.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ACD268_RS09625 (ACD268_09625) asnA 1883373..1884365 (-) 993 WP_061816329.1 aspartate--ammonia ligase -
  ACD268_RS09630 (ACD268_09630) - 1884477..1885160 (-) 684 WP_001016917.1 Bax inhibitor-1/YccA family protein -
  ACD268_RS09635 (ACD268_09635) - 1885216..1885956 (-) 741 WP_330789202.1 RNA methyltransferase -
  ACD268_RS09640 (ACD268_09640) - 1885990..1886268 (+) 279 WP_001174614.1 acylphosphatase -
  ACD268_RS09645 (ACD268_09645) yidC 1886346..1887272 (+) 927 WP_000835955.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 345 a.a.        Molecular weight: 37551.60 Da        Isoelectric Point: 5.0772

>NTDB_id=1043740 ACD268_RS09610 WP_000727284.1 1881270..1882307(-) (sepM) [Streptococcus pneumoniae strain FC1]
MKKKIRWPLYVIAALIVTFLAFVVPLPYYIEVPGGSEDIRQVLKVNDTEDKEAGAYQFVTVGVQHATLAHMIYAWLTPFT
DIRSAQETTGGSSDVEFMRINQFYMQTSQNMAKYQGLKTAGKEIELKYFGVYVLNVTDNSTFKGILNISDTVTAVNDQTF
DSSKDLIDYVSSQKLGDSVKVTYEEDGQTKSAEGKIITLENGKNGIGIGLIDRTEVISNVPISFSTAGIGGPSAGLMFSL
AIYTQIAHPDLRNGRIVAGTGTIDRDGNVGDIGGIDKKVVASARAGAAIFFAPDNPVSEEEQKAHPDAKNNYQTALEAAK
TIKTDMKIVPVKTLQDAIDYLKNNP

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=1043740 ACD268_RS09610 WP_000727284.1 1881270..1882307(-) (sepM) [Streptococcus pneumoniae strain FC1]
ATGAAAAAAAAGATTAGATGGCCTTTGTATGTCATTGCGGCCTTGATTGTGACCTTCTTGGCATTTGTGGTGCCTTTGCC
CTACTATATAGAGGTTCCAGGTGGTTCGGAAGATATTCGCCAAGTCCTTAAAGTAAATGACACAGAAGATAAGGAAGCTG
GTGCCTATCAATTCGTTACGGTTGGTGTTCAACATGCTACTTTAGCTCATATGATTTATGCTTGGTTGACACCTTTTACA
GATATTCGTAGTGCTCAGGAGACTACAGGTGGTTCTTCCGATGTTGAATTTATGCGAATCAATCAATTCTACATGCAAAC
ATCGCAAAATATGGCCAAGTATCAAGGACTAAAAACAGCTGGTAAGGAAATCGAACTCAAGTACTTTGGAGTTTATGTTT
TGAATGTGACGGATAATTCAACCTTTAAAGGGATTCTCAATATCTCTGATACAGTCACAGCAGTCAATGATCAGACCTTT
GATAGTTCCAAAGACTTGATTGATTACGTCAGTTCTCAAAAATTAGGGGACTCCGTCAAGGTCACCTATGAAGAGGATGG
GCAAACCAAGTCTGCAGAAGGAAAGATTATCACCTTGGAAAATGGCAAAAATGGAATTGGAATCGGCTTGATTGACCGTA
CAGAGGTAATCAGCAATGTCCCAATTAGCTTTTCAACAGCTGGTATTGGCGGTCCAAGTGCTGGTCTCATGTTTAGTCTA
GCTATCTATACTCAAATAGCTCACCCAGATCTTCGTAATGGTCGTATTGTTGCCGGTACAGGTACCATTGACCGCGATGG
TAATGTGGGAGACATTGGAGGTATTGATAAGAAGGTTGTAGCTTCGGCTAGGGCAGGTGCTGCTATTTTCTTTGCTCCTG
ATAACCCTGTTAGCGAAGAAGAACAAAAGGCGCATCCGGACGCGAAAAACAACTACCAAACAGCCCTAGAAGCGGCTAAA
ACAATCAAGACGGATATGAAAATCGTGCCCGTTAAAACCCTACAAGATGCGATTGATTACTTGAAAAACAATCCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A380LR41

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

59.649

99.13

0.591


Multiple sequence alignment