Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACEPRU_RS19340 Genome accession   NZ_CP168297
Coordinates   3765439..3766062 (-) Length   207 a.a.
NCBI ID   WP_004860161.1    Uniprot ID   A0AAP1QFX2
Organism   Raoultella ornithinolytica isolate SECR20-0334     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3760439..3771062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEPRU_RS19325 (ACEPRU_19325) helD 3760675..3762729 (-) 2055 WP_373392914.1 DNA helicase IV -
  ACEPRU_RS19330 (ACEPRU_19330) - 3762852..3763298 (+) 447 WP_004860167.1 YccF domain-containing protein -
  ACEPRU_RS19335 (ACEPRU_19335) yccS 3763316..3765451 (+) 2136 WP_325928441.1 YccS family putative transporter -
  ACEPRU_RS19340 (ACEPRU_19340) sxy/tfoX 3765439..3766062 (-) 624 WP_004860161.1 TfoX/Sxy family DNA transformation protein Regulator
  ACEPRU_RS19345 (ACEPRU_19345) sulA 3766524..3767033 (+) 510 WP_004860159.1 SOS-induced cell division inhibitor SulA -
  ACEPRU_RS19350 (ACEPRU_19350) ompA 3767386..3768456 (+) 1071 WP_004860157.1 porin OmpA -
  ACEPRU_RS19355 (ACEPRU_19355) matP 3768566..3769018 (-) 453 WP_004860155.1 macrodomain Ter protein MatP -
  ACEPRU_RS19360 (ACEPRU_19360) - 3769204..3770961 (+) 1758 WP_004860153.1 Lon protease family protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23307.87 Da        Isoelectric Point: 9.5421

>NTDB_id=1043677 ACEPRU_RS19340 WP_004860161.1 3765439..3766062(-) (sxy/tfoX) [Raoultella ornithinolytica isolate SECR20-0334]
MKKISSLRFHQLQECLSPLGKISCRPLFGGYSLAIDDTVFAMVAEGEIYLKICEQSAEYRVVHATPLLTMRKNGRPVLLK
YYQVDETLWGDSKTLFNLSASSLQSARNEKHRQRASGRLKDLPNISFHMELLLINAGVSDENMLRQFGAEKVWLKLRESN
KALTLNVLYALEGAIAGVHSAALPTQRRQELKVWADSQHKSIDAYSG

Nucleotide


Download         Length: 624 bp        

>NTDB_id=1043677 ACEPRU_RS19340 WP_004860161.1 3765439..3766062(-) (sxy/tfoX) [Raoultella ornithinolytica isolate SECR20-0334]
ATGAAGAAAATTTCATCTTTACGGTTCCATCAACTCCAGGAATGTTTATCTCCACTCGGCAAAATAAGCTGTCGCCCGCT
CTTTGGGGGCTATAGCCTTGCCATAGACGATACCGTTTTTGCCATGGTTGCCGAGGGCGAAATCTATCTTAAAATTTGTG
AGCAGAGCGCGGAATATCGCGTTGTGCATGCTACCCCTCTTTTGACGATGCGGAAAAATGGTCGCCCGGTATTACTGAAA
TATTATCAGGTTGACGAGACTCTCTGGGGGGATAGCAAAACGCTTTTCAATCTATCGGCGTCCTCATTACAAAGTGCACG
TAATGAAAAGCACCGACAGCGCGCGTCCGGAAGATTAAAAGATCTCCCGAACATCAGTTTTCACATGGAGCTGCTGTTGA
TTAACGCGGGCGTGAGCGATGAAAACATGCTCCGTCAGTTTGGTGCTGAGAAAGTCTGGCTGAAATTGCGCGAGTCAAAT
AAAGCCCTCACCCTGAATGTTCTCTATGCGCTGGAAGGCGCGATTGCCGGCGTGCATTCCGCAGCGCTCCCGACGCAGCG
GCGTCAGGAGCTTAAGGTTTGGGCCGACAGCCAGCACAAGAGTATCGATGCTTACTCGGGTTGA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

52.792

95.169

0.502

Multiple sequence alignment