Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   ABNX08_RS11630 Genome accession   NZ_CP168265
Coordinates   2502367..2503728 (-) Length   453 a.a.
NCBI ID   WP_022535393.1    Uniprot ID   -
Organism   Cupriavidus sp. DF5525 strain 73-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2497367..2508728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNX08_RS11610 (ABNX08_011610) - 2497802..2498791 (-) 990 WP_349607315.1 MurR/RpiR family transcriptional regulator -
  ABNX08_RS11615 (ABNX08_011615) - 2499083..2501017 (+) 1935 WP_022535390.1 ATP-binding cassette domain-containing protein -
  ABNX08_RS11620 (ABNX08_011620) - 2501168..2501653 (-) 486 WP_022535391.1 disulfide bond formation protein B -
  ABNX08_RS11625 (ABNX08_011625) - 2501798..2502364 (-) 567 WP_022535392.1 GNAT family N-acetyltransferase -
  ABNX08_RS11630 (ABNX08_011630) radA 2502367..2503728 (-) 1362 WP_022535393.1 DNA repair protein RadA Machinery gene
  ABNX08_RS11635 (ABNX08_011635) alr 2503838..2504959 (-) 1122 WP_022535394.1 alanine racemase -
  ABNX08_RS11640 (ABNX08_011640) lplT 2505539..2506858 (+) 1320 WP_041681475.1 lysophospholipid transporter LplT -
  ABNX08_RS11645 (ABNX08_011645) - 2506909..2508042 (-) 1134 WP_349607314.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 48376.69 Da        Isoelectric Point: 7.2389

>NTDB_id=1043558 ABNX08_RS11630 WP_022535393.1 2502367..2503728(-) (radA) [Cupriavidus sp. DF5525 strain 73-1]
MAKTKTVYTCTECGGTTPRWAGQCPHCQQWNTLVETVAETASTKRFQPLAASATVRKLSEIEAADVPRFSSGIDEFDRVL
GGGLVSGGVVLIGGDPGIGKSTLLLQALANLAGQRRVLYVSGEESGAQIALRAQRLGVESPSLGLLAEIQLEKIQATLEV
EKPEVAVIDSIQTLYSEALTSAPGSVAQVRECAAQLTRIAKSTGITIILVGHVTKEGSLAGPRVLEHIVDTVLYFEGDTH
SSHRLIRAFKNRFGAVNELGVFAMTERGLRGISNPSALFLSQHEETVPGSCVLVTQEGTRPLLVEVQALVDTAHVPNPRR
LAVGLEQNRLALLLAVLHRHAGVACFDQDVFLNAVGGVKITEPAADLAVLLSIHSSMRNKPLPRGLVVFGEVGLAGEIRP
SPRGQDRLKEAAKLGFTLAVIPKANAPKQKIDGLEVIAVERIEQAIDRVRHLD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=1043558 ABNX08_RS11630 WP_022535393.1 2502367..2503728(-) (radA) [Cupriavidus sp. DF5525 strain 73-1]
TTGGCCAAGACCAAGACTGTCTATACCTGTACCGAATGCGGCGGCACCACGCCGCGCTGGGCCGGCCAGTGCCCGCATTG
CCAGCAGTGGAACACGCTGGTGGAGACGGTGGCCGAGACCGCCTCGACCAAGCGCTTCCAGCCGCTGGCCGCGTCGGCCA
CGGTGCGCAAGCTGTCCGAGATCGAGGCGGCCGACGTGCCGCGCTTTTCCAGCGGCATCGATGAATTCGACCGCGTGCTG
GGCGGCGGCCTGGTGTCGGGCGGGGTGGTGCTGATCGGCGGCGACCCCGGCATCGGCAAGTCCACGCTGCTGCTGCAGGC
ACTGGCCAACCTGGCCGGGCAGCGCCGCGTGCTCTATGTCAGCGGCGAAGAATCCGGCGCGCAGATCGCGCTGCGCGCGC
AGCGCCTGGGGGTGGAAAGCCCGTCGCTTGGGCTGCTGGCGGAAATCCAGCTCGAGAAGATCCAGGCCACGCTGGAGGTA
GAGAAGCCCGAAGTCGCGGTGATCGACTCGATCCAGACCCTGTATTCCGAGGCGCTGACCTCCGCGCCGGGCTCGGTCGC
GCAGGTGCGCGAATGCGCGGCGCAGCTGACGCGCATCGCCAAGAGCACCGGCATCACCATCATCCTGGTCGGCCACGTGA
CCAAGGAAGGCAGCCTGGCCGGGCCGCGCGTGCTGGAGCATATCGTCGACACGGTGCTGTACTTCGAGGGCGATACCCAC
TCCTCGCACCGGCTGATCCGCGCTTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTGGGCGTGTTCGCGATGACCGAGCG
CGGGCTGCGCGGCATCAGCAACCCGTCGGCGCTGTTCCTGTCGCAACATGAAGAGACCGTGCCGGGCTCGTGCGTGCTGG
TGACGCAGGAGGGCACGCGGCCGCTGCTGGTGGAAGTCCAGGCGCTGGTCGATACGGCGCATGTGCCCAACCCGCGCCGG
CTGGCCGTGGGGCTGGAGCAGAACCGTCTGGCGCTGCTGCTGGCGGTGCTGCACCGGCATGCGGGTGTCGCCTGCTTCGA
CCAGGACGTGTTCCTGAACGCGGTCGGCGGGGTCAAGATCACCGAGCCCGCCGCCGACCTGGCGGTGCTGCTGTCGATCC
ACTCGTCGATGCGCAACAAGCCGCTGCCGCGCGGGCTGGTGGTGTTCGGCGAAGTCGGGCTGGCGGGCGAAATCCGGCCG
AGCCCGAGGGGGCAGGACCGGCTGAAGGAGGCCGCCAAGCTGGGTTTCACGCTGGCCGTGATCCCCAAGGCCAACGCGCC
CAAGCAGAAGATCGACGGGCTCGAAGTGATCGCGGTGGAGCGCATCGAGCAGGCGATCGACCGCGTGCGGCACCTGGATT
GA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(60-217)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.106

99.779

0.51
  radA Streptococcus mitis SK321

47.137

100

0.472
  radA Streptococcus pneumoniae D39

47.033

100

0.472
  radA Streptococcus pneumoniae TIGR4

47.033

100

0.472
  radA Streptococcus pneumoniae R6

47.033

100

0.472
  radA Streptococcus pneumoniae Rx1

47.033

100

0.472
  radA Streptococcus mitis NCTC 12261

46.813

100

0.47

Multiple sequence alignment