Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ABNX08_RS01800 Genome accession   NZ_CP168265
Coordinates   359356..360834 (-) Length   492 a.a.
NCBI ID   WP_022533457.1    Uniprot ID   -
Organism   Cupriavidus sp. DF5525 strain 73-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 354356..365834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABNX08_RS01770 (ABNX08_001770) - 354765..355433 (-) 669 WP_022533452.1 LON peptidase substrate-binding domain-containing protein -
  ABNX08_RS01775 (ABNX08_001775) rapZ 355531..356415 (-) 885 WP_022533453.1 RNase adapter RapZ -
  ABNX08_RS01780 (ABNX08_001780) - 356523..356852 (-) 330 WP_349605442.1 PsiF family protein -
  ABNX08_RS01785 (ABNX08_001785) hprK 357022..357993 (-) 972 WP_012351664.1 HPr(Ser) kinase/phosphatase -
  ABNX08_RS01790 (ABNX08_001790) ptsN 358074..358529 (-) 456 WP_022533455.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ABNX08_RS01795 (ABNX08_001795) hpf 358957..359307 (-) 351 WP_022533456.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  ABNX08_RS01800 (ABNX08_001800) rpoN/rpoN1 359356..360834 (-) 1479 WP_022533457.1 RNA polymerase factor sigma-54 Machinery gene
  ABNX08_RS01805 (ABNX08_001805) lptB 361003..361803 (-) 801 WP_022533458.1 LPS export ABC transporter ATP-binding protein -
  ABNX08_RS01810 (ABNX08_001810) lptA 361860..362513 (-) 654 WP_022533459.1 lipopolysaccharide transport periplasmic protein LptA -
  ABNX08_RS01815 (ABNX08_001815) lptC 362628..363245 (-) 618 WP_022533460.1 LPS export ABC transporter periplasmic protein LptC -
  ABNX08_RS01820 (ABNX08_001820) - 363268..364251 (-) 984 WP_041681225.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 492 a.a.        Molecular weight: 54660.94 Da        Isoelectric Point: 4.9092

>NTDB_id=1043550 ABNX08_RS01800 WP_022533457.1 359356..360834(-) (rpoN/rpoN1) [Cupriavidus sp. DF5525 strain 73-1]
MKPSLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVEQALTENPLLERENDWIESPLRVAADGSVNLQSAPAPAPAEPQ
GNGDARTDAAGDDDSYGDSSSGDDYGSDWSLDDFARRPQGDDDEKTPMQLRDAEPTLREYLMEQLAPLKISTRDKGLAIF
LIESLDDDGYLSASLEEICTELPEELEFEIEEVHAILTLLQSFDPPGVGARNAAECLALQLRRLKHPQRDLALVIVTNHL
ELLAVRDYTRLKKALQVDEAALKAAHELIRSLAPYPGHAYSRPEADFVVPDVFVRKSGGGWTAQLNPDVMPRLRINDMYA
QILRGAKGESGTAGLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKNFFTHGEIAMRPLVLREIADTLGLHESTISRV
TTNKYMATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLIGAEDPRNPLSDSRIAELLGEQGFVVARRTVAKYREA
LKIPAVNLRKSL

Nucleotide


Download         Length: 1479 bp        

>NTDB_id=1043550 ABNX08_RS01800 WP_022533457.1 359356..360834(-) (rpoN/rpoN1) [Cupriavidus sp. DF5525 strain 73-1]
ATGAAACCGTCGCTACAGCTCCGCCTCTCCCAGCACCTGGCACTCACGCCGCAACTGCAGCAGTCGATCCGGCTGCTGCA
GCTTTCAACGCTGGAACTGCAGCAGGAAGTCGAACAGGCGCTGACGGAAAACCCCCTGCTCGAACGTGAGAACGACTGGA
TCGAAAGCCCGCTGCGCGTGGCCGCCGACGGCTCGGTCAACCTGCAGAGCGCGCCCGCACCCGCGCCGGCCGAGCCGCAA
GGAAACGGTGACGCGCGCACCGACGCCGCGGGCGACGATGACAGCTACGGCGACAGCAGCAGCGGCGACGACTATGGCAG
CGACTGGAGCCTTGACGACTTCGCCCGCCGGCCGCAAGGCGACGATGACGAAAAGACGCCGATGCAGCTGCGCGACGCCG
AGCCGACGCTGCGCGAATACCTGATGGAGCAGCTCGCGCCGCTGAAGATCTCGACGCGCGACAAGGGCCTGGCGATCTTC
CTGATCGAATCGCTGGACGACGACGGCTACCTGAGCGCGTCGCTCGAGGAAATCTGCACCGAGCTGCCGGAAGAACTCGA
ATTCGAGATCGAGGAAGTCCACGCGATCCTGACGCTGCTGCAGAGCTTCGATCCGCCCGGCGTGGGCGCGCGCAATGCCG
CCGAGTGCCTCGCGCTGCAATTGCGGCGCCTGAAGCACCCGCAGCGCGACCTGGCGCTGGTCATCGTCACCAACCACCTG
GAACTGCTGGCAGTGCGCGACTACACGCGGCTGAAGAAGGCGCTGCAGGTGGACGAAGCGGCGCTGAAGGCGGCGCATGA
ACTGATCCGCTCGCTCGCGCCCTATCCCGGCCATGCCTACAGCCGCCCGGAAGCCGATTTCGTGGTGCCCGATGTATTCG
TGCGCAAGAGCGGCGGCGGCTGGACCGCGCAACTCAACCCGGATGTGATGCCGCGGCTGCGCATCAACGATATGTACGCG
CAGATCCTGCGCGGCGCCAAGGGCGAGTCGGGCACGGCCGGCCTGCAGCAGAAGCTGCAGGAAGCGCGGTGGCTGATCAA
GAACATCCAGCAACGGTTCGACACCATCCTGCGTGTCTCACAGGCCATTGTCGAGCGTCAAAAGAACTTTTTCACCCACG
GCGAAATCGCCATGCGCCCCTTGGTTTTGAGGGAGATTGCCGATACACTGGGTTTACACGAGTCAACCATCTCCCGGGTG
ACGACCAATAAATACATGGCAACGCCGATGGGTACTTTCGAATTGAAGTACTTCTTCGGCAGCCACGTGTCCACCGAAAC
CGGTGGCGCGGCTTCATCAACGGCCATCCGCGCCTTGATCAAGCAACTGATAGGAGCCGAAGACCCGAGGAATCCCCTTT
CCGACAGTCGCATTGCCGAACTGCTGGGCGAACAAGGCTTCGTTGTCGCACGCCGCACCGTTGCCAAGTATCGCGAAGCC
CTGAAAATCCCCGCAGTCAATCTCCGCAAGTCTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(335-490)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(129-319)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

79.641

100

0.811

Multiple sequence alignment