Detailed information    

insolico Bioinformatically predicted

Overview


Name   hns   Type   Regulator
Locus tag   ACEN3H_RS17055 Genome accession   NZ_CP168231
Coordinates   3653848..3654174 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter lactucae strain 2024CK-01095     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 3648848..3659174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEN3H_RS17035 (ACEN3H_17035) - 3648950..3649576 (-) 627 WP_016144131.1 FHA domain-containing protein -
  ACEN3H_RS17040 (ACEN3H_17040) gspD 3649617..3651893 (-) 2277 WP_373358150.1 type II secretion system secretin GspD -
  ACEN3H_RS17045 (ACEN3H_17045) - 3651935..3652771 (-) 837 WP_373358151.1 type II secretion system protein N -
  ACEN3H_RS17050 (ACEN3H_17050) gspN 3652771..3653514 (-) 744 WP_373358152.1 type II secretion system protein N -
  ACEN3H_RS17055 (ACEN3H_17055) hns 3653848..3654174 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  ACEN3H_RS17060 (ACEN3H_17060) - 3654369..3654809 (-) 441 WP_213033121.1 thioesterase family protein -
  ACEN3H_RS17065 (ACEN3H_17065) - 3654817..3656010 (-) 1194 WP_057105132.1 hypothetical protein -
  ACEN3H_RS17070 (ACEN3H_17070) - 3656020..3656862 (-) 843 WP_373358153.1 hypothetical protein -
  ACEN3H_RS17075 (ACEN3H_17075) - 3656871..3657638 (-) 768 WP_373358154.1 uroporphyrinogen-III synthase -
  ACEN3H_RS17080 (ACEN3H_17080) hemC 3657642..3658559 (-) 918 WP_373358155.1 hydroxymethylbilane synthase -

Sequence


Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=1043334 ACEN3H_RS17055 WP_000801427.1 3653848..3654174(-) (hns) [Acinetobacter lactucae strain 2024CK-01095]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=1043334 ACEN3H_RS17055 WP_000801427.1 3653848..3654174(-) (hns) [Acinetobacter lactucae strain 2024CK-01095]
ATGAAACCGGATATCAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCAATTGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTCAGTGTTGAACAACTTC
TTGAGTTTGGTGCTCAAAAACGTAAGAAAACAACTCGTAAATCTGTTGAGCCTCGTTACCGCAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGTGGTAAACAACCACGCTGGTTAGTTGCTGAAATTGAAAAAGGCGCAAAACTAGAAGATTTCTT
AATCTAA

Domains


Predicted by InterproScan.

(12-102)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1


Multiple sequence alignment